Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02350 AATAATAATTTGAGTATGGAAAGCCCTCCCACTCCTTCTTACGTCGTGGTTGCATGTGATGCCACAAGGGACCGCACTGAAAACGAGATCAAACTCGTTGTTGATCATGTCCGGTCCAGGGGTTCCTTTCTCTCTCATGGTGACAAGCTGCTTGTGCTTTGTGTGTTGCACAAAGTGTCTCACCCCATGGGGTACCAGACATTAGCATGTCCCGAGTCATTTGCTGGAACCAACTTTCGTACTATGGAGGAAGAAGTCAAAAAGAAAGTTGATACGTATGCTAATGAGCTTTTATCATGTTATGAAGATTTTGAAAGAGAAGGGGCTACTATTGAAATTAAAGTCACCGCAGGATTTCCAATTAAACAAGTTGTTTTACAGGAGATTACAAATTATAATGCATCATGGATAATTCTTGACAGACATCTACGGCGCGACCTGAGATACCACCTTAACAAGTTGCCGTGTAAGGTTGCATTAGTTAAAGATGACTTGTCTCTGGAAATTTGGAAATCTCATAATACACATGACACAAAGGTCACAGCAACAAAGTTTGTATTTTCTTTATCAAAGTTTGTGTCGCTATCAGATTGTCATTGTATTGAAGACATTGAGCAATCAATTGTCTCTTTCAAAAGCTATCCCCATTCTATAGTTGCTTCTGATACCAGTACTACGATTAGGAGCTATACGAAACAGTCAAGTGTTAACAGGTCGCGCGATTACAGTTCCGTATCAGAATTTGGATCCTCTTCTAAGCAAGAAAGATCAGGCATAAGCATTAAAGGAGAATATAGGTATCTCACCAGTTCTCTGATTGACCATAAGCCAAACCAAAGTGACTTTCTGCCAAAACATTCAGATGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACTGAGTTATCTATCTCAGACTCAATGAAGTTCAGCTACTCTGACATACAACTTGCAACAAATGACTTTTCAAAGGAGAACTTATTAGGTGAAGGTGGCTATGGTCACGTATACAAGGGCGTGCTTAAAGATGGACAGCAAATTGCGGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGATTTTCTGAATTTCATTCTGAGGTCTACGTCTTAAGCTTTGCCCGACACAAGAATATAGTGATGCTGTTGGGTTATTGTTGCAAAGAAAGGAAAAACATCCTCATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAAGGCAGCAGTTCTTGAGTGGCACCAGAGGTATGCTATTGCCATTGGGATTGCAAAGGGATTGCGTTTTCTACACGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATACTTCTCACCCACGATATTGTTCCCATGCTAGGTGACTTTGGCCTTGCTAAATGGAAGACTGGTAATGAAACTCCTCAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCCGAAGACGGTATTGTTTCTGAGGGAACAGATGTGTACTCTTATGGCATTATCCTGTTACAATTGATATCAGGACGGCAGGTTGGCAATTCCAACAATCCAGAACAACAACAATCTCTGCGACAATGGGCTGAGCCAATGATAGAGAAGTTGGCCTTACATGAACTGATTGACACTCGTCTAGCGGAATTATATGACACCTATGAACTGTACCTCATGGCCAAAGCAGCATACTTCTGTGTGCAAAGGAAGCCTGAGATGCGTCCCTCAATGGGAGAGGTTGTGCGACTTCTCGAGGGAGAAAGTAGCCACTTCCACTCTTTGGAAGATCAATTTGTTCCTAATTTTAACGGCTAA 1836 0.4167 NNNLSMESPPTPSYVVVACDATRDRTENEIKLVVDHVRSRGSFLSHGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRTMEEEVKKKVDTYANELLSCYEDFEREGATIEIKVTAGFPIKQVVLQEITNYNASWIILDRHLRRDLRYHLNKLPCKVALVKDDLSLEIWKSHNTHDTKVTATKFVFSLSKFVSLSDCHCIEDIEQSIVSFKSYPHSIVASDTSTTIRSYTKQSSVNRSRDYSSVSEFGSSSKQERSGISIKGEYRYLTSSLIDHKPNQSDFLPKHSDAPLLCTGCGTRTELSISDSMKFSYSDIQLATNDFSKENLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKERKNILIYEYICNKSLHWHLFENKAAVLEWHQRYAIAIGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDIVPMLGDFGLAKWKTGNETPQTRIMGTLGYLAPEYAEDGIVSEGTDVYSYGIILLQLISGRQVGNSNNPEQQQSLRQWAEPMIEKLALHELIDTRLAELYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFVPNFNG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02350 611 ProSiteProfiles Protein kinase domain profile. 322 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02350 611 Pfam Protein kinase domain 323 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02350 611 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vimu10g02350 611 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 398 602 - -
Vimu10g02350 611 Gene3D Phosphorylase Kinase; domain 1 295 397 - -
Vimu10g02350 611 Gene3D HUPs 6 162 IPR014729 -
Vimu10g02350 611 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 294 397 - -
Vimu10g02350 611 Gene3D Transferase(Phosphotransferase) domain 1 399 605 - -
Vimu10g02350 611 CDD STKc_IRAK 328 593 - -
Vimu10g02350 611 SUPERFAMILY Protein kinase-like (PK-like) 307 591 IPR011009 -
Vimu10g02350 611 ProSitePatterns Tyrosine protein kinases specific active-site signature. 443 455 IPR008266 GO:0004672|GO:0006468
Vimu10g02350 611 PANTHER OS01G0253100 PROTEIN 233 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02350 Vimu-Chr10 34294244 34297990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02350 295 594 Trihelix Transcription Factor Family AT4G32710 44.089 5.32e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu10g02350 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02350 - - vun:114163670 1176.77