Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02335 ATGTCTATGCACTCTAAGCAGCTGCTGCTGCAGCTGCTTCTCGTTGCCTTCCTTATTGCAAAATCTAAAACTCAAGCCATATCAAAGCCAAACTGTTCTTCAAACTGTGGCGATGTTACCGTTCCCTTCCCCTTCGGCATCTCCGACACTTGTTCCTTAGACCCCTCATTTGTTCTTACTTGCAACCAAATCTCTCCCTCATCACACACCCTCTTCCTGCCACACACCAATATAACTGTGCTTAACATCTCACTCAACGGCCACATGCAAATTTCATGGCCTGTAGCCAGCGACTGCTACGCCGACAGAGGCAAACTCGTGAGTCAATCATTTCAAGACCTAAACCTCACAACTTTTCAAGTCTCTTCCAACAGAAACAGGTTGACTGTAGTTGGGTGTGACACGCTTGGATTAATGGTGGGAAGCGATTTGGAAGGAAAGAACTACACCACGGGATGCATTTCCTTGTGCAACAGGCTCCAAGACATCGAAACAAACGGCACTTGTTCCGGCACCGGTTGTTGCGAGACCTCGATTCCACGCGGGTTGTCGAGTTTCTCCTACGGTTCAGGGAGTTTGTTCAAGCACTCGCATGTAATAGACTTCAACCCGTGCGGGTATGTGTTTCTTGTGGAAGACGGGGCCTACAATTTCTCCTCCACGGACCTCGTTAAGTTCGACAAAACCACGTTTCCCGTTGCGGTGGATTGGGTGGTTAAGAACCAAACGTGCGAAGATGGTAAGAAAGAGGCTTTCAGTTACGCCTGTAAGGCAGAGAACAGTGAATGTTTCCATTCAGTAGAGACATCTGGTTACCTTTGCCGCTGCTCAAATGGTTTCGTGGGAAACCCCTATCTTCTTCATGGTTGCCAAGATGTTAATGAATGCATGGGATCCAACGACTGCGTTGATGGGGCCAAATGCAGTAACTCTCCTGGTGGTTATAACTGTTTATGCCCAAAAGGATTTGAAGGAGATGGAAAAAATTATGGAACAAGATGCACTTACAAATCTACCATCAATTCAAGGAAAGAAATCATACTCATAATTGCTCTGAGTGTGAGTGTAGGCCTAGTGGCCCTACTCTTGGGATGCTTTTATGTGTATTGGGCATCAAAGAAAAGAAAGATCATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGTCTTTTCTTACAACAACACATAATCAACCATAAAGGATCAATTGAAACGGCTAAAGTGTTCACTATAGAGGAGCTAGAAGAGGCCACCGACAACTTTGACGAAGACAAGATTCTTGGCCAAGGTGGACAAGGAACAGTTTACAAAGGAGTATTGCCTGACAATAGAACAGTGGCAATTAAGAAGTCTAAAATCAGTGATCCGAATCAGATTGAGCAATTCATTAACGAGGTGATTGTGCTTTCCCAAATCAATCATAGGAATGTGGTAAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCCATGCTTGTTTATGAATTCATTCCCAATGGTACTATTTATGAGCACCTTCATGATCATAATTGTTCTCTAAAACTTTCATGGAAAACAAGGTTGAGAATAGCAACAGAAACAGCTGGGGCCTTGGCTTATTTGCACTCAGCTACTTGTACACCAATCGTACACAGAGATGTGAAAACTACAAATATTCTTCTTGATCATAATCTGATTGCAAAGGTTTCTGATTTTGGAGCATCAAGGATTTTCCCCCTTGATCAGTCTCAACTAACCACTCTGGTGCAGGGAACATTAGGGTATCTTGATCCTGAATACTTTCACACAAGCCAATTGACAGAGAAGAGTGATGTGTATAGTTTTGGGGTTGTCCTGGCAGAGCTAATAACAGGAAAGAAGGCACTTTCATTTGATAGGCCAGAGGCTAATAGAAACCTTGCAGTGTACTTTATTTCTTCAATGAAAACAGGTCAATTACTTAACATTGTGGACAACCAAATATTGCATGATGCAGATGTTGAGCAACTGAAAGAAGTTGCCAATATTGCAAATCGATGTTTAAAGGTGAAAGGAGAGGAAAGACCCAGCATGAAAGAAGTGGCAGTGGAACTTGAGGGACTTCAAATTGTCGGAAAACACGGATGGGAAAGTCTTAGTTCATCTTCAGAAGAGACTGAAAACTTCATAAACTCAGCACCATCCGTTCTTTGTGTTGAAAGTGGCATCAATTTAGCTTTTGATAGCTTAAACCAGATTTCCACGTCTTTGGGGAGAGGAAGATGA 2247 0.4272 MSMHSKQLLLQLLLVAFLIAKSKTQAISKPNCSSNCGDVTVPFPFGISDTCSLDPSFVLTCNQISPSSHTLFLPHTNITVLNISLNGHMQISWPVASDCYADRGKLVSQSFQDLNLTTFQVSSNRNRLTVVGCDTLGLMVGSDLEGKNYTTGCISLCNRLQDIETNGTCSGTGCCETSIPRGLSSFSYGSGSLFKHSHVIDFNPCGYVFLVEDGAYNFSSTDLVKFDKTTFPVAVDWVVKNQTCEDGKKEAFSYACKAENSECFHSVETSGYLCRCSNGFVGNPYLLHGCQDVNECMGSNDCVDGAKCSNSPGGYNCLCPKGFEGDGKNYGTRCTYKSTINSRKEIILIIALSVSVGLVALLLGCFYVYWASKKRKIIKLKEQFFQQNGGLFLQQHIINHKGSIETAKVFTIEELEEATDNFDEDKILGQGGQGTVYKGVLPDNRTVAIKKSKISDPNQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPMLVYEFIPNGTIYEHLHDHNCSLKLSWKTRLRIATETAGALAYLHSATCTPIVHRDVKTTNILLDHNLIAKVSDFGASRIFPLDQSQLTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELITGKKALSFDRPEANRNLAVYFISSMKTGQLLNIVDNQILHDADVEQLKEVANIANRCLKVKGEERPSMKEVAVELEGLQIVGKHGWESLSSSSEETENFINSAPSVLCVESGINLAFDSLNQISTSLGRGR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02335 748 FunFam Wall-associated receptor kinase 2 392 497 - -
Vimu10g02335 748 Gene3D Phosphorylase Kinase; domain 1 394 497 - -
Vimu10g02335 748 SMART egf_5 295 335 IPR000742 -
Vimu10g02335 748 SMART egf_5 243 291 IPR000742 -
Vimu10g02335 748 ProSiteProfiles Protein kinase domain profile. 422 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02335 748 Pfam Protein tyrosine and serine/threonine kinase 425 691 IPR001245 GO:0004672|GO:0006468
Vimu10g02335 748 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 704 IPR045274 GO:0007166
Vimu10g02335 748 Pfam Calcium-binding EGF domain 292 334 IPR001881 GO:0005509
Vimu10g02335 748 Gene3D Transferase(Phosphotransferase) domain 1 498 709 - -
Vimu10g02335 748 SUPERFAMILY Protein kinase-like (PK-like) 406 690 IPR011009 -
Vimu10g02335 748 FunFam Fibrillin 2 287 330 - -
Vimu10g02335 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Vimu10g02335 748 SMART serkin_6 422 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02335 748 CDD STKc_IRAK 428 695 - -
Vimu10g02335 748 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Vimu10g02335 748 SMART egfca_6 292 335 IPR001881 GO:0005509
Vimu10g02335 748 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Vimu10g02335 748 ProSiteProfiles EGF-like domain profile. 292 335 IPR000742 -
Vimu10g02335 748 SUPERFAMILY EGF/Laminin 291 329 - -
Vimu10g02335 748 Pfam Wall-associated receptor kinase galacturonan-binding 32 88 IPR025287 GO:0030247
Vimu10g02335 748 Gene3D Laminin 240 334 - -
Vimu10g02335 748 CDD EGF_CA 292 326 - -
Vimu10g02335 748 FunFam Wall-associated receptor kinase 2 498 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02335 Vimu-Chr10 34114081 34116674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02335 12 741 Receptor kinase-like Gene Family AT1G21250 44.993 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu10g02335 PK_Tyr_Ser-Thr 9.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02335 - - var:108330433 1402.5