Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02334 ATGGCTTCAGCACGAGACAGTACAAAAGTTGTGCTAGTTGCTTGCTTAGTAATGATCTCAGCAGCGTCACAAACAATTCGTCCGAGCTGCCAAAAAAGATGTGGAAGCGTTAGCATTCCGTATCCATTTGGTACAACTGAGGACTGTTACATGAACAGCAACTTTTATGTTGCTTGTAACACAAGTCACAAGCCTCCCAAACTATTTCTGTGGAATGTGACAAAAAATATTGAGATATTAGAGTTGTCATTGAATGGCCATTTGCGGGTAAAATCCCCAGTAGCGTATGTCTGCTATGATGAAAAGGGTGTGCTAGTAGATTCAGGGAATTCATCTATGACTTTGCAAGCATTCCCCTTCTCCTACACCCAGAACAAGTTCGTAGGAATTGGATGCGACACCCTTTCAACCATCAATGCAACAATTGGGAAAAACTACTCTGCTGGAGGGTGTTTCTCTCTATGTAGTAGTGTAGAAAGTTCAACCAATGGATCCCAGTTTGGCATTGGTTTCTGCCAAACCTCCATCCCAAAAAACATTTTGGCATATGAAGCTCGTGTCCTGAGATCAAATTTGCTTCATAAGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGACTCTTTCTTGTTTTCCACGGATTACTTCATCAAACTGCAGAAGAGAAGAACAGTTCCCACAGTGCTTGACTGGGCTGTTGGGAATCTAACATGTGAAGAAGCTAAGAATAATTTGACTAGTTATGTTTGCCAAGAAAATAGCGTATGTATTGATTCTCAAAATGGAGCCGGGTACCTCTGCGGATGCTTAGAAGGTTATGTGGGAAATGCATACCTTAAGGGTGGATGCCAAGATATTGATGAGTGTGCCAATCCGAGTCTAAATGATTGTTCAGACATTTGCATTAACCTACCCGGGAGTTATAATTGTTCTTGTCCCAAGACCAGGAAGCACCAGGGAGATGGCAGAAAAGGCGGAAGTGGCTGTGTCTCGAATCTACAACATGTGGTTAACGAGATTGTGATAGGAACTGGCATAGGCCTTGTGCTGTTGTTAACTGGTAGTGGTTGGCTATACCATATATTTAGTAAAAGAAAACGGGCGAGTCGCTCAGCGCGATATTTTAAGAGAAATGGTGGCTTAATGTTAGAGCAGCAAATTTCAAAGATGGAAGGATCATCTGAGAGAGCTAAAATATTTACTGCAAGAGAGCTGAAGAAAGCCACTGAAAACTTTCACGACAGCAGAATCATTGGCAGAGGAGGCTACGGCACAGTTTATAAGGGAATTCTTCCAAATGACCAAGTTGTTGCCATAAAGAAATCAAAACTAGTAGATCACAGCCAAATTGAACAATTTGTCAATGAAGTGGTTGTACTTTCCCAAATAAACCACAGAAATGTGGTCAAACTCCTAGGTTGCTGTCTGGAGACAGAAATGCCACTGCTAGTTTATGAATTTGTGAACAACGGAACACTCTTTGATCACATTCACAATGAAAACACCACACTTTCCTGGGAAACACGTCTAAGAATAGCAGCAGAAACAGCTGGTGTGCTTGCTTACTTGCATTCTTCAGCTTCCATACCGATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGACAAATACACAGCTAAAGTTTCTGACTTTGGAACCTCTAGATTGGTTCCACGTGACAAGTGTCAGTTGACAACATTGGTTCAGGGAACTCTTGGGTATCTTGATCCTGAATACTTTCAGACCAGTCAACTAACTGAGAAAAGTGATGTGTATAGCTTTGGTGTTGTACTTGCTGAGTTGCTAACTGGAAGAAGGGCACTTTCTTTTGACATGCCCGAGGAGGAGAGGAATTTGGCGTTGTATTTTCTTTCGGCTGTGAAGGATGATTGCTTGTTCCAAATTGTTGAGGATTTTGTCAATGAGGGAAACAGTGAGCAGGTGAAGGAAGTTTCTAACATTGCTCAATGGTGCTTGAGGCTTAGAGGTGAGGAAAGACCTACCATGAAGGAAGTTGCTATGGAATTGGAAAGTCTCAAAACCATGACAGCCACAACTTCACTGATTAATGCCACATCGAATGCAGCAGAATACGTTATCGTTGAAAGATCAGGTTCAGCAGAAAAAGACACTGCTAATTGTCATTATACTTATGCTATACGTGCTGGACCTGAGGATGATACCATTTGCAACGATGTGATGTCACCGTTATGGGATGGTAGATGA 2244 0.418 MASARDSTKVVLVACLVMISAASQTIRPSCQKRCGSVSIPYPFGTTEDCYMNSNFYVACNTSHKPPKLFLWNVTKNIEILELSLNGHLRVKSPVAYVCYDEKGVLVDSGNSSMTLQAFPFSYTQNKFVGIGCDTLSTINATIGKNYSAGGCFSLCSSVESSTNGSQFGIGFCQTSIPKNILAYEARVLRSNLLHKDMNIPCSYSLLVEEDSFLFSTDYFIKLQKRRTVPTVLDWAVGNLTCEEAKNNLTSYVCQENSVCIDSQNGAGYLCGCLEGYVGNAYLKGGCQDIDECANPSLNDCSDICINLPGSYNCSCPKTRKHQGDGRKGGSGCVSNLQHVVNEIVIGTGIGLVLLLTGSGWLYHIFSKRKRASRSARYFKRNGGLMLEQQISKMEGSSERAKIFTARELKKATENFHDSRIIGRGGYGTVYKGILPNDQVVAIKKSKLVDHSQIEQFVNEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNENTTLSWETRLRIAAETAGVLAYLHSSASIPIIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGRRALSFDMPEEERNLALYFLSAVKDDCLFQIVEDFVNEGNSEQVKEVSNIAQWCLRLRGEERPTMKEVAMELESLKTMTATTSLINATSNAAEYVIVERSGSAEKDTANCHYTYAIRAGPEDDTICNDVMSPLWDGR 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02334 747 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 686 IPR045274 GO:0007166
Vimu10g02334 747 Pfam Protein kinase domain 415 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02334 747 FunFam Wall-associated receptor kinase 2 385 490 - -
Vimu10g02334 747 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Vimu10g02334 747 FunFam Wall-associated receptor kinase 2 491 704 - -
Vimu10g02334 747 CDD EGF_CA 288 316 - -
Vimu10g02334 747 SMART egf_5 291 333 IPR000742 -
Vimu10g02334 747 SMART egf_5 240 287 IPR000742 -
Vimu10g02334 747 SMART egfca_6 241 287 IPR001881 GO:0005509
Vimu10g02334 747 SMART egfca_6 288 333 IPR001881 GO:0005509
Vimu10g02334 747 Gene3D Laminin 240 290 - -
Vimu10g02334 747 Gene3D Transferase(Phosphotransferase) domain 1 491 706 - -
Vimu10g02334 747 SUPERFAMILY EGF/Laminin 287 324 - -
Vimu10g02334 747 Gene3D Phosphorylase Kinase; domain 1 379 490 - -
Vimu10g02334 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Vimu10g02334 747 SUPERFAMILY Protein kinase-like (PK-like) 401 697 IPR011009 -
Vimu10g02334 747 Gene3D Laminin 291 327 - -
Vimu10g02334 747 ProSiteProfiles Protein kinase domain profile. 415 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02334 747 ProSitePatterns Calcium-binding EGF-like domain signature. 288 313 IPR018097 GO:0005509
Vimu10g02334 747 CDD STKc_IRAK 421 685 - -
Vimu10g02334 747 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
Vimu10g02334 747 Pfam Calcium-binding EGF domain 288 318 IPR001881 GO:0005509
Vimu10g02334 747 FunFam Wall-associated receptor kinase 2 239 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02334 Vimu-Chr10 34110413 34113211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02334 27 722 Receptor kinase-like Gene Family AT1G21230 44.741 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu10g02334 Pkinase 8.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02334 - - var:108330433 1430.62