Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02328 ATGAGGCAGAAACAGCGAGGAAGTTCTGATGTCGACAACGAAGTGAAGAACGACGTGTCGGTTTCTCAGTTGGCAGATGGGAACCGTAGAACCCTAATTTTGTTATTCTATAGCGATTTATTGTTGTTATTTGTATTTTCTTATTCTTTTTTGGGGACTGAGGATGGAGGCTATGCAGATAAGCCTGAATGTGATGAACGAGTCCAGAGTTTGAAAGATGAAGGCATGGATAGTGAGGTGACAATTGAAGATGATAATTGTGTTGCTGAAGAGGGAAAACATTTGAATAGTAAAGCCATGAATGATGAGGTTGCAATTGTTCATGCAAATGGTGTTGCTGGAGAGGTTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGTGGCAGTTGGAGATAAAGGTGTTTCTGGTGGAGTGGAATGTTTGCGAACTTATAAGAGGCGTAAGAAATCAAGTTCAAGAGGCAAAACTCAGGAACAATGCAGAGCAGGCATGGCAACTGCAAGTGGGATAGCGGATCAGGATGTGAAGAAACCATGTGATCTAGCTTTAGGCAATACATCAGATGATTGTTCCCAAGGACAGTGGGGAAATATTGTACTAAATCATTTATATCAGTCACTAGGTGATGGGAATGGTGGTGTGGAGGGATGCATAAGGGAAGCACTTAATCCTAAACAAAACCTTGCCCCTACTGTTATGGAAACATTTCTAATTGAAAAAAATGGTAAAAGATGCTCTTCGCAATCTGAGCTGCTTTCTCATAGAACAGGGAAGGAAGCTAATCGACATGCAGATGTCATGTGTAATGGATGTTCCAGTGAATTACCTGACCATGGTGTGACTGAGATGTGTCAACGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTCCGCTCATTGTGTAAGGCTTTGCTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACCATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAGCACTCTTCTTGTCGGATATTCAACAGGTTTGGGGAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTGCCAAGAGCCTATCAAGCATGTCAACAACTTCCTACTCAGAGCTGGTAGGAGTTTCAGCACCCAGCACATTTCAAGATGAGAAGCAGCCGCTTTTGTTTGTCTGTTTTGCTGGCCATAGACCTGAAATTTCTTGGTTATATGCATGTTTATCTTTTGGAAAATGTTATGATAACTATTTTCTGAAATGGTCTGCTAGACACCGGGCCTTGAGAGCAGCGGGGCTAAAAGAAACATTCTTGCAGGCCCAGTTAGCTGAAAGCTTATATCGAGTAGAATCTGGGTTGCAGAGCCGAGAGTTTGGCTTTCTCGTGAAACCAGAACAGACGCAAGACATTGCTATGTACAGAATCGGCAGTTGCAGCCGTTGTGGAGAGAAGGCAGATGACAAAGACTGTTTAGTTTGTGATTCATGTGAGGAGATATTCCATGTGTCCTGTATTGAGCCGTTAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAGGTGTACTGCTAATGGGATTGGATCTCCACATGAGCATTGTGTACTATGTGAAAGGTTAAATGATGAACAGACCCCAAATGGCATAATTGGTGATGAAAGCTTTCCTACAATTAAGGAAACAAAACATGAATTTGAAGAAAATTCAAATTGTACCTCTGATGGGATTGAAGTTTCTGTAGGTGAGAAAACAACACCCGTTTGCAAAATTTGCAGAAATGAAGTGGATGGTAAAAAGAGAAAAAAGGTGAAAATATGTGGCCATAAGTTTTGCGCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGTTAAAGTCATACTGTCACTGTTGGTACTGCCCTTCTTGTTTATGCGGTGTTTGCTTAATTGATCGAGATGATGATCAGATCGTTATCTGTGATGGCTGTGATCGTGGATATCACATCTATTGTTTGACACCTCCACTGTCTTCTATTCCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGAGATACAAGCAATTCACAAGGCTAAAAAGGCGTATGAAAGTAACGAGCCAAGCAGAAAAGGGAGAGATGCTGCTAAGCCAAATGCTAAACTTGATAAGAAACACAGAAATAAACGAGCAAGAGAAATGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATACTCTGAATTTTGAAGAGAAAAAGGCAGCAATCCAGATTGAGTCACAGACAACATGA 2295 0.4144 MRQKQRGSSDVDNEVKNDVSVSQLADGNRRTLILLFYSDLLLLFVFSYSFLGTEDGGYADKPECDERVQSLKDEGMDSEVTIEDDNCVAEEGKHLNSKAMNDEVAIVHANGVAGEVRVLKSEPFSNGVAVGDKGVSGGVECLRTYKRRKKSSSRGKTQEQCRAGMATASGIADQDVKKPCDLALGNTSDDCSQGQWGNIVLNHLYQSLGDGNGGVEGCIREALNPKQNLAPTVMETFLIEKNGKRCSSQSELLSHRTGKEANRHADVMCNGCSSELPDHGVTEMCQRVLCNILTSEKFRSLCKALLENFQGMKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWGKLQDTGNEIVALAKSLSSMSTTSYSELVGVSAPSTFQDEKQPLLFVCFAGHRPEISWLYACLSFGKCYDNYFLKWSARHRALRAAGLKETFLQAQLAESLYRVESGLQSREFGFLVKPEQTQDIAMYRIGSCSRCGEKADDKDCLVCDSCEEIFHVSCIEPLVKEIIPHKSWYCARCTANGIGSPHEHCVLCERLNDEQTPNGIIGDESFPTIKETKHEFEENSNCTSDGIEVSVGEKTTPVCKICRNEVDGKKRKKVKICGHKFCANKYYHVRCLTKKQLKSYCHCWYCPSCLCGVCLIDRDDDQIVICDGCDRGYHIYCLTPPLSSIPSGKWFCRLCDAEIQAIHKAKKAYESNEPSRKGRDAAKPNAKLDKKHRNKRAREMERGGAMDMLLTAANTLNFEEKKAAIQIESQTT 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02328 764 Gene3D - 436 528 - -
Vimu10g02328 764 SMART PHD_3 479 526 IPR001965 -
Vimu10g02328 764 SMART PHD_3 643 688 IPR001965 -
Vimu10g02328 764 SMART PHD_3 590 642 IPR001965 -
Vimu10g02328 764 Pfam PHD-finger 480 527 IPR019787 -
Vimu10g02328 764 Pfam PHD-finger 643 689 IPR019787 -
Vimu10g02328 764 ProSiteProfiles Zinc finger RING-type profile. 591 641 IPR001841 -
Vimu10g02328 764 MobiDBLite consensus disorder prediction 700 735 - -
Vimu10g02328 764 SUPERFAMILY FYVE/PHD zinc finger 642 690 IPR011011 -
Vimu10g02328 764 ProSiteProfiles Zinc finger PHD-type profile. 640 690 IPR019787 -
Vimu10g02328 764 ProSitePatterns Zinc finger PHD-type signature. 480 525 IPR019786 -
Vimu10g02328 764 PANTHER OS02G0192300 PROTEIN 465 545 - -
Vimu10g02328 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 695 IPR013083 -
Vimu10g02328 764 MobiDBLite consensus disorder prediction 700 719 - -
Vimu10g02328 764 ProSiteProfiles Zinc finger PHD-type profile. 477 528 IPR019787 -
Vimu10g02328 764 SUPERFAMILY FYVE/PHD zinc finger 474 527 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02328 Vimu-Chr10 33946288 33958201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02328 642 711 C2H2 Transcription Factor Family AT3G01460 47.222 1.54e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g02328 PHD 1.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02328 - - gmx:100795906 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02328 10 33946288 33958201 Vimu10g02328 10 33946288 33958201 ECH
Vimu1g02380 1 34428115 34441629 Vimu10g02328 10 33946288 33958201 PCT