Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02327 ATGCTTCCGCGGCGGTGCACGGCGTCAGCGGCGGCGGGGCAGACGGGGAGCAGCGACAGCGACTTGGATGAGTTTATTATGCGGTGCCTCTCCTGCGAGGAGCAATACGACATGATGGACTCCGGAACCTGCAGGGAGTGCTACCAAGAGGCCAACGAGGCCGAGGAGGAGCTCCGCCTCGAGATCGATGACCTCAAGTCCAAGGTCTCCTTCCTCACACTCTCCTCTCCCACTCTCAATCCTTCTACCGCCGATATCGTCCTCGTTCCCGTCGACGACTCCGACGCCACACCCATTCCCGCTCACAAGCATGTTCTGGTTAGTCGCTCTCCTGTTTTCAATGCAATGCTTGAGAATGATATGGAGGAAAGGCGGAGTGGCACCATCAAGATTTCTGACGTATCACATGATACCCTCCGCGCTTTTGTTAACTACTTATACACTGCTGAAGCGCCCCTTGATAACCAAATGGCCTGTAACCTGTTGGTTTTGGGAGAAAAGTATCAAGTGAAGCATCTGAAGACATATTGTGAGAAGTATTTGATCGCCAAAATGAATTGGAATAGGGCTATTGCAAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACGAAGTGCGTCCTTGGCAGTGATCTTGGACAAAATGGATTCGCTCACTCAAAATGAATATTATGCGGAGCTCGTGGACACCAATCCTCGTCTTGTTGTGGAAATATATGAAACATATATTGGCAAGCAATTAAACACCGCAGGCACCTTTTAG 768 0.4961 MLPRRCTASAAAGQTGSSDSDLDEFIMRCLSCEEQYDMMDSGTCRECYQEANEAEEELRLEIDDLKSKVSFLTLSSPTLNPSTADIVLVPVDDSDATPIPAHKHVLVSRSPVFNAMLENDMEERRSGTIKISDVSHDTLRAFVNYLYTAEAPLDNQMACNLLVLGEKYQVKHLKTYCEKYLIAKMNWNRAIANYAFAYQYNCKQLRSASLAVILDKMDSLTQNEYYAELVDTNPRLVVEIYETYIGKQLNTAGTF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02327 255 Pfam BTB/POZ domain 81 183 IPR000210 GO:0005515
Vimu10g02327 255 SUPERFAMILY POZ domain 78 182 IPR011333 -
Vimu10g02327 255 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g02327 255 ProSiteProfiles BTB domain profile. 84 155 IPR000210 GO:0005515
Vimu10g02327 255 SMART BTB_4 84 185 IPR000210 GO:0005515
Vimu10g02327 255 PANTHER SPECKLE-TYPE POZ PROTEIN 70 250 - -
Vimu10g02327 255 Gene3D - 187 254 - -
Vimu10g02327 255 Coils Coil 48 68 - -
Vimu10g02327 255 Gene3D Potassium Channel Kv1.1; Chain A 51 186 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02327 Vimu-Chr10 33939201 33941539 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu10g02327 BTB 2.3e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02327 K10523 - gmx:100794118 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02327 10 33939201 33941539 Vimu10g02327 10 33939201 33941539 ECH