Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02321 ATGCCTCAAACGGCTCCTACCGGAGAACCCTCCCATGGAGGCTCCGGTGGCCGCAAGGTGGTGGTGGGGGTGAAGATGGATTCCCCCAGCAAGGAATTGCTCACATGGGCTTTGGTCAAAGTGGCTCACCCTGGTGACACCGTGGTTGCTCTGCATGTTCTTGGAAACCAGGAAACTGTGAATGGAGACGGGAAATCTGCGCTGCTTTCACTTGTCAAGGCTTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAACTTGAAACAGGTTGACCTCAAACTCAAAATATGCCGTGGTTCATCGGTGAAGAAAATTTTGGTTCGAGAAGCAAATGGTTATTCTGCAACTCATGTTGTGGTCGGAACAACTCATGGTCTGCATAGAATCCGGTCATCTACCTTTGTAGCTAAATACTGTGCTAAAAAGTTGTCCAAGGATTGCTGTATTCTCGCTGTTAACAATGGGAAAGTTGTATTCAAGCGTGACAGCTCGCCACCGAGTGTTGCTGACGTACAAGGTGTCAGATTGTTCTTAGTTTTGATTGTGGCCATTCTCACGGACATGGTAGAATTCTCAGGCTTGAGGACGGATGCTGATGAGAAGAAACCTGACCAAAGTTCAGATCACAGTTTAGCCAAGTTTTTCCTAGATTCTACAGAAACTGTTAGAAAACCGAGCTGTTCAATTTGTGGCACAACCTTGGCATTGCCAGACCCTTCTTGCAACCAATCTGCAGAAGGGTTTTCTGGTGATGATGGTAAAGACAATTCCTTGGCTATAGTACCAGTGCAAGTGCAACCCACTGTTGCTGCAGAAACGGAATTGAAACCTGGTTGGCCACTACTACACCGTAGAATTATATCGGACACACAATCTACTGATAGATCATTGATGCACCCCAAGATTTCCGTGGTCCAGTGGGCAATGAGGTTACCTTCTAGAAATATTTCATATGCTTCAGTTCGTGATGAAAAACCTGAAAGTGGTGACCAAAGTCTGGATCAACCTGCAGCTTTAGATAGGGAAAGTGGTGCTCTTGTTCCAATAGATTCTGAAATCGGTACAGCTTCTTCGCCAGAAAGCAATTCAAGAAACATTCCTAAAGAATTGGAGGGCCTTCACGAGAAGTACTCCTCAACTTGTAGATTGTTTGGGTACCAAGATCTTGTATCTGCCACATCAAATTTCTTACCGGAAAACTTTATTGGGAAAGGAGGAAGCAGTCAGGTTTTTAGAGGCTGCCTTTCTGATGGCAAGGAACTTGCTGTCAAGATTCTAAAGCCTTCCGAAGATGTATTGAAGGAATTTATTCTGGAAATCGAAATCATCACTACTTTGCATCACAAAAACATAATTTCCCTCCTGGGATTCTGCTTTGAGAATGGCAAATTTCTTCTGGTTTATGATCTCTTATCAAGGGGAAGTCTTGAAGAGAATCTTCATGGTAATAAGAAAAATTCACTTGCGTTTGGTTGGTCGGAGAGATATAATGTTGCTGTGGGTATTGCTGAGGCTTTAGATTATCTGCATTCTAAAGATGATCAACCCGTGATCCATCGGGATGTAAAGTCATCAAATGTGTTATTATCCGAGGATTTTGAACCCCAGTTCAACATAATCTGTATTATTGAGCCTCATGATCTGCTTGAATTTCTTCAGCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTCGTCATCACACATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCCGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGACGTTTATGCATATGGGGTGGTACTCCTTGAACTTCTTTCGGGGAGAAGGCCCATAAACCGTGATTATCCTAAAGGCCAAGAGAGTCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCAAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAAGATGGTGTTGGCAGCCACACTGTGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAAGCTTTGTAATTTCCTGGACAATGACCTGAATGTTTGCGTTTTGCTTATCCTAAATCCTGTGATCTTAAAGCTCCTTCAAGGTGACATTGAAACAATGAAGTGGGCAAGGTTAGAAGTTAAGAATGGTTTGGATGCAGCAGAAACGGTTGATGATGAAGCGTGTCCACCTAGTGATAATCTGCAGTCACATATAGATCTTGCACTGCGTGATGTGGTGGAAGAGTCACTCTCCATGTGCAGTGTTGAGCAGGGTTTGACATTGGAGGACTACTTGAGAGGCCGTTGCAGCCGTGCATCAAGCTTTGACTGA 2346 0.4373 MPQTAPTGEPSHGGSGGRKVVVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNQETVNGDGKSALLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREANGYSATHVVVGTTHGLHRIRSSTFVAKYCAKKLSKDCCILAVNNGKVVFKRDSSPPSVADVQGVRLFLVLIVAILTDMVEFSGLRTDADEKKPDQSSDHSLAKFFLDSTETVRKPSCSICGTTLALPDPSCNQSAEGFSGDDGKDNSLAIVPVQVQPTVAAETELKPGWPLLHRRIISDTQSTDRSLMHPKISVVQWAMRLPSRNISYASVRDEKPESGDQSLDQPAALDRESGALVPIDSEIGTASSPESNSRNIPKELEGLHEKYSSTCRLFGYQDLVSATSNFLPENFIGKGGSSQVFRGCLSDGKELAVKILKPSEDVLKEFILEIEIITTLHHKNIISLLGFCFENGKFLLVYDLLSRGSLEENLHGNKKNSLAFGWSERYNVAVGIAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQFNIICIIEPHDLLEFLQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRRPINRDYPKGQESLVMWASPILNSGKVLQLLDPSLGDNYDHEEMEKMVLAATLCIKRAPRARPQMKLCNFLDNDLNVCVLLILNPVILKLLQGDIETMKWARLEVKNGLDAAETVDDEACPPSDNLQSHIDLALRDVVEESLSMCSVEQGLTLEDYLRGRCSRASSFD 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02321 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Vimu10g02321 781 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 131 - -
Vimu10g02321 781 ProSitePatterns Protein kinases ATP-binding region signature. 403 425 IPR017441 GO:0005524
Vimu10g02321 781 Gene3D Phosphorylase Kinase; domain 1 361 471 - -
Vimu10g02321 781 CDD USP_Like 19 153 - -
Vimu10g02321 781 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 366 471 - -
Vimu10g02321 781 Gene3D HUPs 17 154 IPR014729 -
Vimu10g02321 781 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Vimu10g02321 781 Gene3D Transferase(Phosphotransferase) domain 1 472 688 - -
Vimu10g02321 781 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 472 684 - -
Vimu10g02321 781 Pfam Universal stress protein family 18 148 IPR006016 -
Vimu10g02321 781 Pfam Protein kinase domain 401 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02321 781 PANTHER OS08G0249100 PROTEIN 76 681 IPR046958 -
Vimu10g02321 781 SUPERFAMILY Protein kinase-like (PK-like) 378 692 IPR011009 -
Vimu10g02321 781 ProSiteProfiles Protein kinase domain profile. 397 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02321 781 MobiDBLite consensus disorder prediction 321 342 - -
Vimu10g02321 781 SMART serkin_6 397 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02321 Vimu-Chr10 33889049 33892419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02321 384 693 Trihelix Transcription Factor Family AT1G68690 40.252 5.86e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu10g02321 Pkinase 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02321 - - pcin:129303222 969.533