Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02319 ATGATTGAGATGGGGTCGTGTGGGAGATCTGCTACCGTTAATGATCCCTCTGGAGGGTCTGTTATTGAGCGGCATTTGTACTCAGAGATTGCGGAGCAGGTTGTTTCTGTGCAGGAGTCTTGTTTGGAAGTGGCCTGCAATGTTGTGGACTCTAATGCGGACCTCTGCACTGTGACCGATGGCTATGAGGGAGAGGACTTTGTGGGTTCTGCAAGGTGTATAGATGAGGGGTCTTGTGATGCTCTGGGTTTGGCAAGTGAATGCGAAAATGCTGATTTGTTGTCACTGGAGAAACCCGCTGAAGATGATTGCTTGAATTGTTTGGGGGTTTCTTATGGGGGCACTGAAGTTCCCTGTGCAAGCAGTGGCCCTGAGGGGAATTTTCAGGGTGAGGAAAACTTTGATTTGCGGTCGCAGCCCCTGACTACTGATGATTCACCGAGGCATTGTGCTCAACAGGATGGGCAGAAAGATGATAAGAGCCACGTGTCACCTGCAGCAGGAGACGAGTCCGTCGTCGGAGGCAAAATCGATGACACATGTCTTCTTGGTGATGTTTTCAATCATGTACTTGATTTCAGGGACTCTGAAATGTCTTTGGAATTAGAATCTGTAGCTGACTTGTTAGTTGATTGCAACCAGCAAAATGAGCAGCAGGAAATTATGAGAAATGCAGATTCCTTGTTCAATGTTGTGGAAAAATGTGATAATCTAATTGGGACAGAAGCTGATGCCTGCAGGCAGATATCTCCTACTGTGGATATGGAAGTGCCATCTGGCGCATTATGTGCAGATACCCAAGTAGAGAGCACAAGTGACCCGAAAGATGGTGAGGTCCAGAATAGTATTTGTGAAGGAAAGGTTAAATCTTTTGTTGATGAAGAAATCATTGTCATTAATTCATGTGTAAAAGTATCATCCTCTCCAGGTTGCCAAGGGACTGTTGAGAGCTCATCTGTAGATTCTCCTTGTGAGCTTGCCTTGTTGGATCCAGGTTGTGAAATGAAGAATGATGTACTACAAATAGAAGATGCTTTCTGTAAATTGAAGGATTGTTCCTCAGAAGAAACTAGCAACTCTACCTTTAGAAAGCCGTTTTCTCCAGAATCAGGCCTGCCCTCGATTGCTTCAATTGCCAACTGCTCTTCAAAGGATGTTTCTGATCTCCATTGTAAGGGTGATGATGCTTCTACTCCTACTGCTACCAATAATGCTGTGGACGATCCAGGGCAGATGGTTAATGATGGAAAAGAAGCACTTAATGTTGATTGTATCACTGAAAGCATTCCATTACTTTCTCAAAGGAGTAGTCGAAGAAGTAAAGTAGGCCGCAAGACACAGACCAAAAAGGCTTCAAGAAGAGGCAAAAACAAAACCAAGGTGACATGTCCTAATGGGGATTATATGAACTTATATTCAGAGGCTGCTAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTATCTGGGGATTGATTGGGAATATTGAACGTTTTTTTGAGCACGATAGTGAGCACGCAGTTGGTGAAGCTGTATGTCAAGAATTTGGGAAGGCAAGAAGCAAGCGTCAAAGTGGGAAAGCAGTTAAGAATAATGCAAGTACTTGCTCATTGAGTTCAGTAAAGAAGTGTCCTGTTTCAACCACCCGTGTTCGTCTAAAGATCAAATTTGGTAAAGAACCTGATTTAAGTTGCTCAAATGTCTTGACTCCTGAGTCTGTTGATGGCTTGGCTTCTGCTTCCTGCTTGGAGTCTGGTTCAGCTTCTCAGAAAATAGCCAGCAATCTCGAAGATAAAATGTTGAAAGTGGTGACATTGGGCAATACAGAATCTTTCAACAATAACGTGGATAAGGATGATCTTGTTCGAAATGGACAATTGGCTAATAGCCCCATAGAAGTACATACTGAAATAACGGAGAAGGCAGATGGAGAAGTAGAGGAGCATTGTCTTGCAGCTCCTCCAGAGAAGGTGATTGAGGCATTGATTGAACCTATCAACAAGGGTATGGATCCTGGAACTTCACCTGATTCAGAAGTGATTAATTCAATTCCCGAAGTCCATGTTGCAGAGAGACATGAAGAAGATTTACATGATGCTGTTATAGGTTCTTCTAAAGAGTTAAATTCTAAAGTGGATGCCACTGTAAGTAAAAGAGGGAAGAAGAAAGACAAAGTTATCAGTTCAGGTATTTGTATCACTGAAGATGAATCTCAAGGTCCGCCTAGGAACCGTAGAGGGAAGCAGTCAAAGAACCGCAGGGGTAAGAAAAATTGTACGGATCCAATTAGCTCTTTGGAGTTGTCTACTCCCACTCAGATAAGCAAATCTGTGAGCAGTAAAGAATTGTTCCCGGAATCTTTGTCCCTTTCTGGAGAGACTGAACTTGGACGCACTGCTGAGGCTTTGAAAGTTAAAAATGACATGGACATTAATACAAGTTGCAAACCATCAGTTGACAATGGATTTTCAGAATCTCAGGTTTCTGAGAATATGTTGTCTTCTGCGAGGCCTTTGGGTCGTAAACTACCTAAAAGTCTTAGACCCAGTAAAGTTAGCAGGACCAAATTTAAAGCTTCTGACTCGGCTGACAGGAAAAAGACTACATGTACACGAAAGGAGAAACAGAAAAAGCCAATTGTTAAGTCCGAAGTCAAGAGAAAAGGTGCCTCTCTTAAAATTACATGTGAAGTGGAAGATCGCCCACATGCAGAAGCAAATATTGGAAATCATAAACTGGATGCTGTCAGAAAAATTAATGCCGAGGACAACAAAGTATCAGTCAACATATCTAGTTTGGACACGCTGTCTGGTGTTGGACTGGGTGGGCAACTTCCGTCTCCCCGTAATGCGTGGGTGCGATGCGATGATTGTCACAAATGGAGGCGAATTCCAGCTGTGCTTGCAGACCTAATTGATGAAACTAACCGTACCTGGACATGTAAGGACAGCAGTGATAGAGCTTTTGCTGACTGTGCTGTTCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCGGGTGACGAAGATGCATATGAAGGCTTCAAAAATTTTAAGGAATTAGAATATCGGCCCCCATTTGTTTCCCAGGGGTCAACTTTTACCCATATATTCACCAATGAATTCCTGCATCGTAGCCATAAAACTCAGACTATTGATGAGATAATGGTCTGTCATTGCAAGGCACCTCAAGAAGGAAAGTTCGGCTGTGGAGATGAATGCCTAAATCGGATGCTTAATATTGAATGTGCACAAGGAACATGCCCATGTGGGGACCGTTGTTCTAACCAGCAGTTCCAAAAACGCAAGTATGCTAGCCTGAGGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCACTTGGCAATGTTGCTAAAGGCCAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAACGTACGAGGCACGGCAAAGAGAATATGCTTTGAAGGGTCATCGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTAATAGATGCAAGTGCTAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCACTGAGGGATATTAAGCAGGTGTGCATTCTGCCTCCACTTACTATTTTCATAAGTGACTATGAGGACATCAGTGTGGGTAAGAAAATTGTATTAGCTATTCAGACGCTTGGTGTTGTCTCTGGTGATGTTGGAACAAGTCCCTTGTATACCTTCAATGTTATGTTTAGAAAGGCCCCTATTAATGGAAATGAAGACATTCTTGGAGCTTTATCACTTGTCTTGTACACATTAATCTTGATTCCTTTGTTGAAGTATGTCCTGGTGGTTCTGTGGGCCAATGATGATGGTGAAGGTGGTATGTTTGCCTTGTACTCGTTGATCTGTCATCATGCTAAGGTTAGTCTTCTCCGCAATCAATTACCATCAGATGCCCGTATATCAAGCTTTAGGCTTAAGGTGCCATCCCCTGAGCTTGAAAGGTCATTAAAAATCAAGGAAAGACTTGAGAATTCTCTGACTCTGAAGAAGATTCTACTAATATTAGTTTTTACTGGTACTTCCATGGTGATTGCTAATGGTGTTGTTACACCGGAAATGTCAGTACTGTCATCTGTTGGTGGTTTAAAAGTTGGGGTAGATGCTATCGAGAAAGATGAAGTGTTGATGATTTCAGTTGCCTGCCTTGTCATTTTGTTCAGTGTGCAAAAGTATGGAACAAGTAAAGTGGGACTTGCAGTAGGACCTACTTTGTTCCTATGGTTTTGTTCTCTGTGCCTACTATTGGGTTATTTGAGTCTAGCTGCATACCTTATGGAAAACCATGCTGATGTTGGTCAAGATGAAGAATTGACATTTGACTACAACTATGTAAGGGTTTTTGGTGCTGCAGCAAAAAAATGTTATTGTGGTTCACCTAGTTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAACTGATAGTTCAAAGTGATTCAGAAGAGGAATTTCCAGAACCTGTTATGCTTACGAGAGATGGTGAAATTGAAGAGGCACCCAAGTATTGTAATAATGATGATACAGAATCTGCTAGAAATATGTTAAAAGGCAGGGATGTATTGGAAAAGTCTACAAGTGCTATAGATTCAGATGGTTCTCCAGAAAAAGAAAGTTCCATGAACCCTGCCTCTGCTGTTTCTCTGTTGCACAGCTCAGCAGAAATGGAGGATTCAAAGGGCAAGTTACCATCTGCCATTCAAGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGCAAACCCATGCCTGCCGTACAAGGATATGAAAAGGAAAAGGAATCAGAGTTTGCAGACAAAACTTCTTCCACTCAAAGATTAGAGAGTACTTCTCCCCTTACAGCTGCCAGCAAAATGTTAACTAATTCGACTGGTAGTAATAGGGAATCCAAGTCTGAAATAATTGAAGGCAAGAAGAATCCCAAGTTAAATGGTTCTGTTAAAAAGGGAAAGGTCCATAGTAGTCCTCCAAATGGCCTTAAAGCCGAGGTGACAGCCAATCGATTGCAGTTGTCATCTGTCAAACATAAAAAGGTTGATGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAGGATGCTACCAAAGGGTACTTGAAGCTTTTGTTTCTTACTGTGGCATCTGGTGATAGAAGCAACGGTGAAGCAATTCAAAGTAATCGAGATCTTTCCATGATACTTGACGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATTATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTGAAGGTCTTAGAGTACCTAGCAGCAAGCAAAATTTTGACACCTGAACAGATTAATGGTGGTCCTCCGTGTCATGGGATGGAGAGCCCAATTGGAAGAATGTCCATTATGGAATGGTTGCTCACTGGTAGTGATTTAATAACCACACGGAAGCTGGCATCCTGTTGCTCCAGTGGTGATGGAGATATATGTAGACACTTTAGAGAGTCAATGCTTTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGTTTCCCAGAACCAACAGAAAACATGGCTATTTGGACAGGGATGATAATAGAATGGAATCTCACAGAACTTTCAATGGTAATAGATTTTCAGCATCACACTGTCATAGACATGAACAGGATTTAAGGGCTGCAGAAGTAATTGACTGTAGTCAGCAGTCTATGCACGTGACAACTCCAGTAGATGCTGATACCCAGGAAAGCTGTCCTGCCCACTCTGTAGATGGGGTTGAAATCAAAGGACCTAAAAAACGGAAGCGCAAGAGCCGATGGGATCAACCGGCGGAGTCAAACTCACTTTCTGATGCCGTTATGAGCTCCGTTGGTGAAAGCCAGAACATTCATGAGGATGTTCCACCAGGGTTTTCGTGTCCATTAAATGCTTCTTCCCTAAACTCTGGCAATCTTGTATTGCAAAATGCAAGCCGTTCTGGATGTCCCTCTGATTTAGTAGTTGGTCATTCAAAAAGGAAATTTAATTCTCGCTTGCCTGTGGCTTATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACACCTCATACTGAATTTCCAGAGCGCTGGGTCACTGCACCTGGCATACCTTTCGTTCCATTTCCTCCACTACCCCCATATCCTCGAGACAATAAAGACTCTCAACCTTCTAATAATTATAGTGCTATGATAATCGATCAGCCTGCTGAAGCTATGACAAGGGATCACTCTGCTGAAGACAAGGAGGGCGATAACAGTAGTATGGTCACTTGTTGCGCAGATGATATGATTCCCAGCACAACTAGTGCTAACCCAGAAGAGTCAAACCTTCTGTTTGAGGACAACGAAGCCAAACGAATGAAGGGTGACTCCCATGATTTGGTAACGAAGTACTATAGACAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTCCGGAGGAATGCATGGAAATGTAATGAGAACAACTCTAATGGTGATATGTGCAGTATAGATGTAGATGTACCAAAAGAGTCGGAAGATACTTGTGATGCGGAGGATGCAATCTGTAGAGAGGAGAAAGGTGGCAATAATATTTATTAG 6828 0.4233 MIEMGSCGRSATVNDPSGGSVIERHLYSEIAEQVVSVQESCLEVACNVVDSNADLCTVTDGYEGEDFVGSARCIDEGSCDALGLASECENADLLSLEKPAEDDCLNCLGVSYGGTEVPCASSGPEGNFQGEENFDLRSQPLTTDDSPRHCAQQDGQKDDKSHVSPAAGDESVVGGKIDDTCLLGDVFNHVLDFRDSEMSLELESVADLLVDCNQQNEQQEIMRNADSLFNVVEKCDNLIGTEADACRQISPTVDMEVPSGALCADTQVESTSDPKDGEVQNSICEGKVKSFVDEEIIVINSCVKVSSSPGCQGTVESSSVDSPCELALLDPGCEMKNDVLQIEDAFCKLKDCSSEETSNSTFRKPFSPESGLPSIASIANCSSKDVSDLHCKGDDASTPTATNNAVDDPGQMVNDGKEALNVDCITESIPLLSQRSSRRSKVGRKTQTKKASRRGKNKTKVTCPNGDYMNLYSEAARKKRSCFSKPARSSIWGLIGNIERFFEHDSEHAVGEAVCQEFGKARSKRQSGKAVKNNASTCSLSSVKKCPVSTTRVRLKIKFGKEPDLSCSNVLTPESVDGLASASCLESGSASQKIASNLEDKMLKVVTLGNTESFNNNVDKDDLVRNGQLANSPIEVHTEITEKADGEVEEHCLAAPPEKVIEALIEPINKGMDPGTSPDSEVINSIPEVHVAERHEEDLHDAVIGSSKELNSKVDATVSKRGKKKDKVISSGICITEDESQGPPRNRRGKQSKNRRGKKNCTDPISSLELSTPTQISKSVSSKELFPESLSLSGETELGRTAEALKVKNDMDINTSCKPSVDNGFSESQVSENMLSSARPLGRKLPKSLRPSKVSRTKFKASDSADRKKTTCTRKEKQKKPIVKSEVKRKGASLKITCEVEDRPHAEANIGNHKLDAVRKINAEDNKVSVNISSLDTLSGVGLGGQLPSPRNAWVRCDDCHKWRRIPAVLADLIDETNRTWTCKDSSDRAFADCAVPQEKSNAEINAELGLSDASGDEDAYEGFKNFKELEYRPPFVSQGSTFTHIFTNEFLHRSHKTQTIDEIMVCHCKAPQEGKFGCGDECLNRMLNIECAQGTCPCGDRCSNQQFQKRKYASLRWFKCGKKGYGLKALGNVAKGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQVCILPPLTIFISDYEDISVGKKIVLAIQTLGVVSGDVGTSPLYTFNVMFRKAPINGNEDILGALSLVLYTLILIPLLKYVLVVLWANDDGEGGMFALYSLICHHAKVSLLRNQLPSDARISSFRLKVPSPELERSLKIKERLENSLTLKKILLILVFTGTSMVIANGVVTPEMSVLSSVGGLKVGVDAIEKDEVLMISVACLVILFSVQKYGTSKVGLAVGPTLFLWFCSLCLLLGYLSLAAYLMENHADVGQDEELTFDYNYVRVFGAAAKKCYCGSPSCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTRDGEIEEAPKYCNNDDTESARNMLKGRDVLEKSTSAIDSDGSPEKESSMNPASAVSLLHSSAEMEDSKGKLPSAIQVEEISQQMEDVTSKPMPAVQGYEKEKESEFADKTSSTQRLESTSPLTAASKMLTNSTGSNRESKSEIIEGKKNPKLNGSVKKGKVHSSPPNGLKAEVTANRLQLSSVKHKKVDGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAASKILTPEQINGGPPCHGMESPIGRMSIMEWLLTGSDLITTRKLASCCSSGDGDICRHFRESMLSLTEHDDKQVHQIARSFRDRWFPRTNRKHGYLDRDDNRMESHRTFNGNRFSASHCHRHEQDLRAAEVIDCSQQSMHVTTPVDADTQESCPAHSVDGVEIKGPKKRKRKSRWDQPAESNSLSDAVMSSVGESQNIHEDVPPGFSCPLNASSLNSGNLVLQNASRSGCPSDLVVGHSKRKFNSRLPVAYGMPWSVAQQYGTPHTEFPERWVTAPGIPFVPFPPLPPYPRDNKDSQPSNNYSAMIIDQPAEAMTRDHSAEDKEGDNSSMVTCCADDMIPSTTSANPEESNLLFEDNEAKRMKGDSHDLVTKYYRQQKWNNSKIHRPWFRRNAWKCNENNSNGDMCSIDVDVPKESEDTCDAEDAICREEKGGNNIY 2275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02319 2275 PANTHER SET DOMAIN PROTEINS 454 1221 - -
Vimu10g02319 2275 Pfam AWS domain 1077 1111 IPR006560 GO:0005634|GO:0042054
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 2016 2035 - -
Vimu10g02319 2275 FunFam Histone-lysine N-methyltransferase 946 1007 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 835 882 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1630 1644 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 734 775 - -
Vimu10g02319 2275 ProSiteProfiles SET domain profile. 1114 1236 IPR001214 GO:0005515
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1569 1587 - -
Vimu10g02319 2275 SMART PostSET_3 1492 1508 IPR003616 -
Vimu10g02319 2275 Pfam CW-type Zinc Finger 954 1000 IPR011124 GO:0008270
Vimu10g02319 2275 Pfam SET domain 1125 1222 IPR001214 GO:0005515
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 856 882 - -
Vimu10g02319 2275 SMART shorttest3 1062 1113 IPR006560 GO:0005634|GO:0042054
Vimu10g02319 2275 ProSiteProfiles AWS domain profile. 1062 1112 IPR006560 GO:0005634|GO:0042054
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 434 460 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 438 457 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1538 1568 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1645 1673 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1538 1587 - -
Vimu10g02319 2275 ProSiteProfiles Post-SET domain profile. 1492 1508 IPR003616 -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1615 1703 - -
Vimu10g02319 2275 SMART set_7 1114 1243 IPR001214 GO:0005515
Vimu10g02319 2275 SUPERFAMILY SET domain 1472 1505 IPR046341 -
Vimu10g02319 2275 Gene3D SET domain 1468 1517 IPR046341 -
Vimu10g02319 2275 Gene3D SET domain 1013 1226 IPR046341 -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 137 171 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 150 165 - -
Vimu10g02319 2275 Pfam K+ potassium transporter 1249 1462 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vimu10g02319 2275 Gene3D - 946 1007 - -
Vimu10g02319 2275 MobiDBLite consensus disorder prediction 1985 2036 - -
Vimu10g02319 2275 ProSiteProfiles Zinc finger CW-type profile. 948 1002 IPR011124 GO:0008270
Vimu10g02319 2275 SUPERFAMILY SET domain 1041 1221 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02319 Vimu-Chr10 33842988 33860641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02319 1235 1453 Inorganic Solute Cotransporters AT5G09400 77.169 3.62e-81 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu10g02319 K_trans 4.4e-52 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02319 - - gmx:100795379 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02319 10 33842988 33860641 Vimu10g02319 10 33842988 33860641 ECH