Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02317 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGACAAGTTACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCACGAATACATCAGCCCTTCAACCACGCTGATTGACATCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCCAAGCATGAGGTAGCTAGAATATGTTCAGTTCCAAGAACCGGTGATTTGTGGTTAGATCTAGATTTGGAACATGTAGGCAAGAGTAGTGAGAAT 339 0.4336 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHEVARICSVPRTGDLWLDLDLEHVGKSSEN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02317 113 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vimu10g02317 113 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 86 - -
Vimu10g02317 113 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu10g02317 113 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vimu10g02317 113 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02317 Vimu-Chr10 33832550 33833149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02317 1 85 MADS-box Gene Family AT5G20240 69.412 1.34e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu10g02317 SRF-TF 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02317 K09264 - gmx:100795861 168.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02317 10 33832550 33833149 Vimu10g02317 10 33832550 33833149 ECH
Vimu1g02359 1 34127847 34131916 Vimu10g02317 10 33832550 33833149 PCT