Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02302 ATGTTATCATTGACCCTAAGTCTTTCTGAATCATTCATATACTTAGTAAATGATAGGAGCAAACACTCAAGATTAAATCAATTGAAGGAAAAACAGGTGCAGATGCGCGTCCATTTAAATCAGCTGTTATGTGTTGTGCTTCTGACTGCAGCAGTAGCAGCTAAAACTCAACTTATGTCAAAGCCACACTGCGAATCAAAGTGTGGCAACGTTACCATTCCTTTTCCTTTTGGCCTCACGGAGGGTTGTTCTCTCAACGCCTCATTTCTCATCACTTGCAACAAAAGCCTTTCGCCACCCATTCCGTTTATGAAAACTATTAATCCAGAATCGCGGTTGCTAGATATCTCACTCGATGGCCAACTTCACGTTTCATTGCCTTTTGTCACAAGTTGTGTCAATAATAAGACTGGTGAATCAGATAACGAAGTGTCTTTGATCGTGTTCCCTATGTCCTTTCACCTATCATCCAAGCAAAATAAGTTAACTGTATTGGGTGCTGACTCGGCAGGAGTAATATATGATATGGATTCAACCATAGTACTGAATCCTCGCACTTCCTGTGTGTCCATGTTCATGTTCAGTGGTGGTGAGAATGAGAAAAGATACGACAACTCGTGCTCTGGCACTTTTTGTTGCGAGACTACAATCCAACAAAGGTTATCAGCGTTCGCCTACACTTGTTCAGCAAATATATTCAACAATAACTTCACTAAGCCATTTCAGTCCTATCCATGTGGTTATACATTTCTGGTTAAGGACGGTGCCTATAATTTCTCCATGAAAGACCTGAACAATTTTAACAAAACGTTTCCTGTGGTTGTGGATTGGGCGATAGGGAACACGTGCCTAGATGCTCAGAAGAATGCTTCAAGCTATGCATGTAAGTCAAAGTACAGTGAATGTCACAATGCAATAGTGGGACCTGGTTACCATTGTAAATGCTCCACTGGTTTTCGGGGAAATCCTTACCTATCCGATGGTTGTCAAGTTAATTATCTTTCAGATGTTGATGAATGTGCTGAGGAATCCCATGACTGTTTAAAGGGGAGATCAACATGCACTAACAGTCCAGAAGGCAGCTACAGTTGTTCTTGTCTAAAGGGCTATGAAGGAGATGGAAAAAATAATGGAAGCGGATGTGTTATCAGGAGTAACCGCAAAATCATAATTGCTTTAAGTGTGACTGGAAGTATATTGGCACTTGTGGGGGGAACCTTATACGTGTATTGCGCATTAAAGAAAAGAAAATCCAACAGACTTAAAGAACATTTTTTTCAACTAAACGGTGGCCTGTTATTACATCAAGAGATAATCAGGTACAGTGGATCAAATGAATTGACAAAAATCTTTACTGTGGAAGAACTAAAAGAGGCCACCAACAATTTCAATAAAGAGATGGTCTTAGGCGAAGGTGGGGAGGGAACAGTTTACAAAGGAATATTGCCTGACAATAGAATTGTAGCAATAAAAAAGTCCAGAATTAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAATCATAGAAATGTGGTGAAACTCTTGGGATGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCATTCCCAATGGAACTGTTTACGAGCATCTCCATGATCAAAGCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTGCTGGTGCCTTGTCATACTTACATTCTGCTACCCATGCACCAATCATACATAGAGATGTGAAAACTTCAAACGTACTACTTGATCACAATCTCACTGCAAAGGTTTGTGATTTTGGAGCTTCAAAGATTATTCCTCTTGATCGAACTCAGTTAACAACTTTGGTGTTGGGGACATTGGGGTATCTTGACCCAGAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTAGCCGAACTACTAACAGGAGAGAAGGCACTCTCTTTTGAAAGGCCAGAGGCTCATAGAAACCTAGCGATTCACTTCCATTCTTCAATGAAAGAGGGTCGATTACTTGACATTGTCGATGGCCGCATATTAGATGAGACAAATGTTGAGCAACTAATGGATGTTGCAAATATTGCAAGCCATTGTTTAAGGTTGAAAGGGGAGGAAAGGCCTACCATGAGAGAAGTGGCAATGGAACTTGAAGGAATCTACCTTGTGGAGAAGCGCCAGTGGGAAAAAGTCAACTTGTCATCGGAGGAGACTGAAACTCTTCTCAAAGCAACACCATCATCTTCTTTTAGTGTAGATGGTGTTAACAGAAGAAGCGTGCATTCTAGCTCTGATATTTTAAACCGAATTTCCTTCTCCTTAACTAGTGGAAGATGA 2385 0.4013 MLSLTLSLSESFIYLVNDRSKHSRLNQLKEKQVQMRVHLNQLLCVVLLTAAVAAKTQLMSKPHCESKCGNVTIPFPFGLTEGCSLNASFLITCNKSLSPPIPFMKTINPESRLLDISLDGQLHVSLPFVTSCVNNKTGESDNEVSLIVFPMSFHLSSKQNKLTVLGADSAGVIYDMDSTIVLNPRTSCVSMFMFSGGENEKRYDNSCSGTFCCETTIQQRLSAFAYTCSANIFNNNFTKPFQSYPCGYTFLVKDGAYNFSMKDLNNFNKTFPVVVDWAIGNTCLDAQKNASSYACKSKYSECHNAIVGPGYHCKCSTGFRGNPYLSDGCQVNYLSDVDECAEESHDCLKGRSTCTNSPEGSYSCSCLKGYEGDGKNNGSGCVIRSNRKIIIALSVTGSILALVGGTLYVYCALKKRKSNRLKEHFFQLNGGLLLHQEIIRYSGSNELTKIFTVEELKEATNNFNKEMVLGEGGEGTVYKGILPDNRIVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFIPNGTVYEHLHDQSKSLRLTWKRRLQIAVETAGALSYLHSATHAPIIHRDVKTSNVLLDHNLTAKVCDFGASKIIPLDRTQLTTLVLGTLGYLDPEYFHSSQLTEKSDVYSFGVVLAELLTGEKALSFERPEAHRNLAIHFHSSMKEGRLLDIVDGRILDETNVEQLMDVANIASHCLRLKGEERPTMREVAMELEGIYLVEKRQWEKVNLSSEETETLLKATPSSSFSVDGVNRRSVHSSSDILNRISFSLTSGR 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02302 794 FunFam Wall-associated receptor kinase 2 539 756 - -
Vimu10g02302 794 Pfam Protein kinase domain 464 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02302 794 SUPERFAMILY Protein kinase-like (PK-like) 447 749 IPR011009 -
Vimu10g02302 794 ProSiteProfiles Protein kinase domain profile. 463 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02302 794 FunFam Fibrillin 2 332 377 - -
Vimu10g02302 794 ProSiteProfiles EGF-like domain profile. 336 376 IPR000742 -
Vimu10g02302 794 Pfam Calcium-binding EGF domain 336 376 IPR001881 GO:0005509
Vimu10g02302 794 SMART egfca_6 336 382 IPR001881 GO:0005509
Vimu10g02302 794 FunFam Wall-associated receptor kinase 2 433 538 - -
Vimu10g02302 794 Gene3D Laminin 281 382 - -
Vimu10g02302 794 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 52 737 IPR045274 GO:0007166
Vimu10g02302 794 CDD EGF_CA 336 373 - -
Vimu10g02302 794 Pfam Wall-associated receptor kinase galacturonan-binding 64 121 IPR025287 GO:0030247
Vimu10g02302 794 Gene3D Transferase(Phosphotransferase) domain 1 539 757 - -
Vimu10g02302 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Vimu10g02302 794 CDD STKc_IRAK 469 736 - -
Vimu10g02302 794 SUPERFAMILY EGF/Laminin 335 381 - -
Vimu10g02302 794 SMART serkin_6 463 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02302 794 SMART egf_5 294 330 IPR000742 -
Vimu10g02302 794 SMART egf_5 339 382 IPR000742 -
Vimu10g02302 794 Gene3D Phosphorylase Kinase; domain 1 439 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02302 Vimu-Chr10 33659756 33662584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02302 35 744 Receptor kinase-like Gene Family AT1G21230 43.232 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu10g02302 Pkinase 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02302 - - vum:124835050 1170.99