Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02293 ATGACCACACAGAATCGTCGTTCGTCGTTTTCCTCCTCGACGACGTCGTCTTTGGCGAAGCGCCATGCATCCACCACCACTTCCTCCTCCACCTCCTCCTCTTTAGCGGCTCCTACAAACGTGCCGAAGAAGCGTCCACCTCTCTCTAACCTCACCAACACCGTCGCTCACCGCAACTCTTCCTCTTCGGTCCCTTGCGCAGCTAAACTCGCGAAGACGAAGAAAGAGGTTGTTCCGCCCTTCTCAGGCAACAAAAGGCCCACGCTGGCGAATGTCAAACCTACTAATGCAGTTGTTTTTCCCAAGGCTAATTCTCTCCCTCCGAGGAATGAAGCTCCTCCTCCTCCTCCACTTGTTGTCACTGTTACTGTTCCCCCTCCGGTGCTCGATGCTTCACCTTGTAAATCAGATGCAATGTCGGTTTCTATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGCCCTGACATTGAATATGTGGACAATAGTGATGTGGCGGCTGTTGATTCAATTGAGAGGAAGACTTTCAGCAATCTCAACATATCTGATTCTACCGAATCAGGCAACATTTGTAGTAGAGACATACTTGTAGAGTTGGAAAAAGGGGACAAGTTTGTCAATGTTGATAACAATTTCGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCCAGCATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCCGATACATTGTATTTGACGGTAAACTACATTGATCGTTATCTTTCAGGAAATGTGATGAACAGACAAAGGCTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATTACTGATAACACGTATTTCAAAGAAGAGGTTCTGCAGATGGAATCTGCTGTCTTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACGGTAAAATGTTTCTTAAGAAGATTTGTACGTGCAGCTCAAGGAGTCGACGAGGTCGCTTCGCTGCAACTTGAGTGCTTGACAAACTACATTGCGGAATTGTCTCTCTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTCTTCCCTTCAACGAAACCATGGAATTCCACATTACAGCATTACACGCTCTACCAGGCTTCTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTATGTAGTAACAGCTCTAACTCAAATTTGCCAGCAATCAGGGAGAAATATAGCCAGCATAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTCCTGAGTTGA 1464 0.4549 MTTQNRRSSFSSSTTSSLAKRHASTTTSSSTSSSLAAPTNVPKKRPPLSNLTNTVAHRNSSSSVPCAAKLAKTKKEVVPPFSGNKRPTLANVKPTNAVVFPKANSLPPRNEAPPPPPLVVTVTVPPPVLDASPCKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTESGNICSRDILVELEKGDKFVNVDNNFADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVASLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSTKPWNSTLQHYTLYQASDLCVCVKDLHRLCSNSSNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFLS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02293 487 Gene3D - 225 473 - -
Vimu10g02293 487 Pfam Cyclin, N-terminal domain 225 351 IPR006671 -
Vimu10g02293 487 PANTHER CYCLINS 165 465 IPR039361 -
Vimu10g02293 487 Pfam Cyclin, C-terminal domain 354 473 IPR004367 -
Vimu10g02293 487 SUPERFAMILY Cyclin-like 354 479 IPR036915 -
Vimu10g02293 487 CDD CYCLIN_AtCycA_like_rpt1 215 350 - -
Vimu10g02293 487 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Vimu10g02293 487 MobiDBLite consensus disorder prediction 1 68 - -
Vimu10g02293 487 Gene3D - 239 352 - -
Vimu10g02293 487 FunFam Mitotic cyclin 6 239 339 - -
Vimu10g02293 487 SMART Cyclin_C_2 354 477 IPR004367 -
Vimu10g02293 487 SMART cyclin_7 358 446 IPR013763 -
Vimu10g02293 487 SMART cyclin_7 261 345 IPR013763 -
Vimu10g02293 487 PIRSF Cyclin_A_B_D_E 1 482 IPR046965 GO:0016538|GO:0044772
Vimu10g02293 487 SUPERFAMILY Cyclin-like 215 351 IPR036915 -
Vimu10g02293 487 ProSitePatterns Cyclins signature. 256 287 IPR006671 -
Vimu10g02293 487 FunFam Cyclin A1 341 473 - -
Vimu10g02293 487 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02293 Vimu-Chr10 33543592 33548073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02293 4 485 Core Cell Cycle Gene Families AT1G44110 62.423 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02293 K06627 - gmx:100789565 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02293 10 33543592 33548073 Vimu10g02293 10 33543592 33548073 ECH
Vimu1g02302 1 33509390 33513607 Vimu10g02293 10 33543592 33548073 PCT