Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02291 ATGGTCGCCAAGTTCGAGAAAAGTTTGAGCAGAGAAAAGCGTCTCATAAGATTGATCCATGTTGTGAGGATAGCAGAAAGTTTTAGTCTTGGAGGCTTCCAGTATGCTTTAAGGCCCAGAACAGAGGGAGATGAGGTGTCTCTAGAGCAAGCTTTGGAAGGAGGAGACGTTACTAACCGACCAAGGCAAGTGAAAGATGTTGCCTACCAAGAGGAAGTTGTTCGAGTTCTAACAAATACACTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCCGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCGTCAGCTTTTCGGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTGTTAAGCGTAAGAAGTATGTGAAATCTAATTCTCTTAAGATTCTTTCCTCCTCCTTTCTCCGCTTTGGTTATCTTTGTCCACCATTCAAGATTATTGTTCTAGATGAGGCTGATTCAATGACAGAAGATGCCCAGGCATGTTTTCTATGTTTTTCATTTCTAAAGTTGCTTGTCTCAAAGTGTTTTGGTTTCACACCACCTTCAATTGCTGTACAGAATGCCCTGAGGCGTACAATGGAAACGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGCAATCATGAGCAGCCGGATATTGTACATATGCAAAGAAGAGGGACTCCGTCTTGATACTGAGGCTCTTTCAACCCTTAGTTCTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTGTTCCAGAAAAAGTTGTGGAGGCAGTTCTTCAAGCTTGCAGGAGTGGTAATTTTGATTTCGCCAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAAATGCTTACTCAGTTATTTGAAGCCATTGTTGAAGAAAATGATCTGTCAGATGAACAGAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGGAGCTTCTAAATTTCAGTGAAGTGCAATTGTCTATGTTTTTCTTCACGTCTCACTTGTTGCTTATGGAATTGCAGTGTCTAGTTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACAATGAAGGCTTTTAGCAACATGCCAGAAGAATTTGCTTACGAGTGTTAG 1299 0.4219 MVAKFEKSLSREKRLIRLIHVVRIAESFSLGGFQYALRPRTEGDEVSLEQALEGGDVTNRPRQVKDVAYQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGVLELNASDDRGINVVRTKIKDFAAVAVGTVKRKKYVKSNSLKILSSSFLRFGYLCPPFKIIVLDEADSMTEDAQACFLCFSFLKLLVSKCFGFTPPSIAVQNALRRTMETIIEPLASRCAKFRFKPLSEAIMSSRILYICKEEGLRLDTEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKELLNFSEVQLSMFFFTSHLLLMELQCLVDGADEYLQLLDVVSNTMKAFSNMPEEFAYEC 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02291 432 Gene3D - 241 304 - -
Vimu10g02291 432 CDD HLD_clamp_RFC 239 298 - -
Vimu10g02291 432 Pfam ATPase family associated with various cellular activities (AAA) 89 185 IPR003959 GO:0005524|GO:0016887
Vimu10g02291 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 297 IPR027417 -
Vimu10g02291 432 CDD AAA 70 187 - -
Vimu10g02291 432 SMART AAA_5 85 230 IPR003593 GO:0016887
Vimu10g02291 432 SUPERFAMILY post-AAA+ oligomerization domain-like 305 379 IPR008921 GO:0003677|GO:0006260
Vimu10g02291 432 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 60 189 - -
Vimu10g02291 432 Pfam Replication factor C C-terminal domain 305 377 IPR013748 -
Vimu10g02291 432 FunFam Replication factor C subunit 4 241 304 - -
Vimu10g02291 432 Gene3D - 58 238 IPR027417 -
Vimu10g02291 432 Gene3D - 305 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02291 Vimu-Chr10 33522932 33531373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02291 60 428 Core DNA Replication Machinery Family AT1G21690 59.845 1.13e-151 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02291 K10755 - gmx:100798331 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02291 10 33522932 33531373 Vimu10g02291 10 33522932 33531373 ECH