Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02288 ATGGCTAGCTTCATGCAACAGCAACCAAAGGGAGTTAATGGAGGTAGTAACCGCATAGTCGCAGTCAATCTCTCTCCCTCTAACAACCTTCCTACACCTTCTCAGCACGATGCCTCTTCAAATCATGAGAAGCCTGGGTGGAAAAAGTTCATGTCATATGTGGGTCCTGGCTTTCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGATCACAAATATGAGCTGCTGTGGGTAATACTGATTGGACTGGTGTTTGCGCTTATAATTCAATCGTTGGCTGCGAATCTGGGCGTAACGACTGGTAAGATCGAAAACAGAGAGTGGAATATCGATGAACAATTGCATGAGATCGATAGTTTTATCGTTGTGGTTTTGAATTTTGCAGGAAAACACCTTTCAGAATTATGTAAAGCCGAATATCCATTATTGGTAAAGTACTGTTTGTGGTTATTAGCTGAGCTCGCTGTCATAGCTGCTGACATACCTGAAGCCTTCGCTTTGAACATACTTTTCCACATCCCTGTATGGGCAGGAGTTCTCATAACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTGGAACTGCTGATATCAGTGCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTACGTAAAACCACCTGCTTCTGGTGTATTGAAAGGAATGTTTGTGCCAAAACTCAGTGGTCAGGGAGCTACAGGGGATGCTATTGCTCTTTTGGGTGCCCTTGTCATGCCGCACAACCTTTTCCTCCACTCTGCTCTGGTCCTGTCTAGAAAAGTACCCAGTTCAGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGATTTGCATTGTTTGTGGCATTCCTAATCAACGTTGCAATGGTTTCTGTGTCTGGAACTGTTTGCGCTGCTGACAATCTTTCTGCAGCAAGTGCTGATCAGTGCAGCGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAACGTGTTGGGACGGTCGAGCTCTACCATTTATGCTATAGCACTGCTAGCCTCAGGACAAAGTTCAGCCATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTGGACATGAGGATGAAAACATGGATTAGAAACTTTATTACTAGATGCATTGCCATAACACCTAGTCTTATTGTTTCAATCATTGGAGGTTCTCAAGGGGCTGGTCGGCTCATCATCATTGCATCGATGATACTTTCATTTGAGCTTCCATTCGCTTTGATTCCTCTGCTTAAGTTCAGCAGCAGCAGTACAAAGATGGGACCTCACAAGAATTCTAAAATTATAATTGTGATCTCATGGATTCTGGGCTTGGGAATCATTGGCATAAATGTATACTACCTTTCTACTGCATTCGTGGGTTGGTTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGCTGATTGGGATCGTAGTGTTTCCTCTAATGGCACTTTATGTTGGGTCAGTAATATACCTAACATTCAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGAAGGAGCAATGGAAAAGGGTCAATTAGAGTTGAATGAAATTCCTTACAGAGAAGACTTGGCTGATATCCCCTTACCACCATAA 1680 0.4321 MASFMQQQPKGVNGGSNRIVAVNLSPSNNLPTPSQHDASSNHEKPGWKKFMSYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKIENREWNIDEQLHEIDSFIVVVLNFAGKHLSELCKAEYPLLVKYCLWLLAELAVIAADIPEAFALNILFHIPVWAGVLITGCSTLLFLGLQRFGVRKLELLISVLVFVMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAMVSVSGTVCAADNLSAASADQCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKTWIRNFITRCIAITPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSKIIIVISWILGLGIIGINVYYLSTAFVGWLIHSSLPKVANVLIGIVVFPLMALYVGSVIYLTFRKDTVKTYIETKNEGAMEKGQLELNEIPYREDLADIPLPP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02288 559 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 137 448 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 Hamap Divalent metal cation transporter MntH [mntH]. 35 482 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 PRINTS Natural resistance-associated macrophage protein signature 206 227 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 PRINTS Natural resistance-associated macrophage protein signature 181 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 PRINTS Natural resistance-associated macrophage protein signature 426 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 PRINTS Natural resistance-associated macrophage protein signature 256 279 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 PRINTS Natural resistance-associated macrophage protein signature 394 411 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 PRINTS Natural resistance-associated macrophage protein signature 366 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 MobiDBLite consensus disorder prediction 23 43 - -
Vimu10g02288 559 Pfam Natural resistance-associated macrophage protein 71 111 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 Pfam Natural resistance-associated macrophage protein 137 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 NCBIfam Nramp family divalent metal transporter 138 445 - -
Vimu10g02288 559 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 526 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu10g02288 559 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02288 Vimu-Chr10 33497294 33502130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02288 15 558 Inorganic Solute Cotransporters AT1G15960 56.703 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02288 K21398 - gmx:100787785 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02288 10 33497294 33502130 Vimu10g02288 10 33497294 33502130 ECH