Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02277 ATGGAGTTTGTGGATAACAGAAAACTACAGTTACAACAACTGCAACAACAGCCGCAACCGCAGGAGCAACATTTTCATGTGTTGGCAGTGGACGACAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTAAGAGCAGTCACCTGCGTGGACTCCGGAGACAAGGCTTTGAAATATCTCGGGTTGGTTGATGACCTTCATGATACTACTTCTTCAACCTCTTTAGAATCGTCATCTTCTCCTCCACCTCAACCATTGCAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGACTATTGCATGCCTGGGATGAGTGGCTATGATTTACTCAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCCGTCGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTGGAAGGAGGGGCAGAAGAGTTTCTGCTGAAGCCTCTTCAGTTATCAGATCTGGACAAGCTTCAATCATACTTTCTGAAATCCCTTGAAAATTCTTGTGAAAAAGAATCTGCTAACAGTTGCATAGATTCGGAGAATGAGAATGTCATCATTAACATCAGTAACCATAACAATACCAGTAACAGTATTAGCAAAAGAAAGAACATATCTCCGGACTCTCATCAGGAGAGATCAAGACCCAAAATGAAGGAGTTGGCTGTGGTGTAA 684 0.4269 MEFVDNRKLQLQQLQQQPQPQEQHFHVLAVDDSVIDRKLLERLLRAVTCVDSGDKALKYLGLVDDLHDTTSSTSLESSSSPPPQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQLSDLDKLQSYFLKSLENSCEKESANSCIDSENENVIINISNHNNTSNSISKRKNISPDSHQERSRPKMKELAVV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02277 227 SUPERFAMILY CheY-like 25 169 IPR011006 -
Vimu10g02277 227 Pfam Response regulator receiver domain 92 158 IPR001789 GO:0000160
Vimu10g02277 227 MobiDBLite consensus disorder prediction 208 227 - -
Vimu10g02277 227 Gene3D - 26 219 - -
Vimu10g02277 227 ProSiteProfiles Response regulatory domain profile. 26 165 IPR001789 GO:0000160
Vimu10g02277 227 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 201 IPR045279 GO:0009736
Vimu10g02277 227 MobiDBLite consensus disorder prediction 200 227 - -
Vimu10g02277 227 SMART REC_2 25 161 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02277 Vimu-Chr10 33259552 33261995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02277 22 167 Response Regulator Gene Family AT3G57040 57.616 5.21e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu10g02277 Response_reg 3.2e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02277 K14492 - gmx:100786187 316.235