Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02271 ATGGCAGAGCGTGTGTTCCTCACTCCTTCGTCACCGCCTTTACCATCTCAACAACACACTCCAACCGCAATGGCTCTTTTCAGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCTCCTCTACTCGCTCATTCTTCTCCCTCTCATCCTCTTCTTCCTCGCTTCAGTGCTTGCGCTCTTCTCCTCGCATTTCGCACCTGTTTCTCAATCAGGTTACGCTTCGTTCTATCTCTGAATACTGCGCTTCTGATTGTTTCTTGAATTTGAGCGCTTGTTCTGGAGGATACGGAACGGTGTCGGCGCCGAAGTCCTTCGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGATATCAAGGAGCTTCTCAGGTCAAAGTTCTGTCATCCTATTCTGATTCGTTTGGGGTGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAATGGCCACAAAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAATTGAGCTGAAACATGGAGCCAATGCTGGACTCGTAAATGCATTGAAGCTTCTTCAGCCGATCAAAGACAAATACTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTGGTGCCACAGCTGTGGAGGAAGCTGGAGGCCCAAAACTCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGTCCCGAAGAAGGGAGACTTCCTGATGCTGGTCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGAATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGAGGTCTAGACCAGATCGTAGTGGTTGGGGAAAGCCTGAGACTAAATATACAAAAGATGGGCCAGGAGCACCTGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCTTACTTCAAGGACATTAAAGAAAAAAAGGATGAAGATCTATTGGTATTGCCAACTGATGCTGCTCTTTTTGAAGACCCATCCTTCAAGGTATATGCTGAGAAGTATGCTGAAGATCAGGAAGTATTCTTTAAAGATTATGCTGAAGCCCATGCGAAACTTAGCAACCTTGGAGCCAAATTTGATCCTCCAGAGGGCATTGTGATAGATGAATCCCCAAATGCAGGGGCAGAGAAGTTCGTAGCAGCCAAATACTCCACTGGAAAGAGAGAGCTGTCTGAAGCAATGAAGCAGAAGATACGGGCTGAATATGAGGCCGTTGGTGGAAGCCCAGATAAGCCTCTACAGTCAAACTATTTTCTAAATATCATGATTATTATTGCAGTTTTGGCACTTTTGACATCACTTCTTGGAAATTAG 1353 0.4605 MAERVFLTPSSPPLPSQQHTPTAMALFSGAASARIIPSVSLSSSTRSFFSLSSSSSSLQCLRSSPRISHLFLNQVTLRSISEYCASDCFLNLSACSGGYGTVSAPKSFASDPDQLKSAREDIKELLRSKFCHPILIRLGWHDAGTYNKNIEEWPQRGGANGSLRFEIELKHGANAGLVNALKLLQPIKDKYSGVTYADLFQLAGATAVEEAGGPKLPMKYGRVDVSGPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKKDEDLLVLPTDAALFEDPSFKVYAEKYAEDQEVFFKDYAEAHAKLSNLGAKFDPPEGIVIDESPNAGAEKFVAAKYSTGKRELSEAMKQKIRAEYEAVGGSPDKPLQSNYFLNIMIIIAVLALLTSLLGN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02271 450 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 118 242 - -
Vimu10g02271 450 ProSitePatterns Peroxidases proximal heme-ligand signature. 262 272 IPR019793 -
Vimu10g02271 450 Gene3D Peroxidase, domain 2 240 363 - -
Vimu10g02271 450 PRINTS Haem peroxidase superfamily signature 132 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Haem peroxidase superfamily signature 212 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Haem peroxidase superfamily signature 194 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Haem peroxidase superfamily signature 302 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 SUPERFAMILY Heme-dependent peroxidases 112 371 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 FunFam L-ascorbate peroxidase T, chloroplastic 240 363 - -
Vimu10g02271 450 CDD ascorbate_peroxidase 103 373 - -
Vimu10g02271 450 Gene3D - 118 371 - -
Vimu10g02271 450 MobiDBLite consensus disorder prediction 269 301 - -
Vimu10g02271 450 PRINTS Plant ascorbate peroxidase signature 193 211 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Plant ascorbate peroxidase signature 212 224 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Plant ascorbate peroxidase signature 111 131 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Plant ascorbate peroxidase signature 331 355 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PRINTS Plant ascorbate peroxidase signature 132 147 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 84 373 IPR044831 GO:0004601|GO:0034599
Vimu10g02271 450 ProSiteProfiles Plant heme peroxidase family profile. 194 419 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g02271 450 Pfam Peroxidase 119 350 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02271 Vimu-Chr10 33164221 33170648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02271 88 368 Peroxidase AT4G36430 26.984 1.68e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02271 K00434 - qsa:O6P43_015163 678.322