Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02259 ATGGCATCGGAGCTTCAATTGCCTCCAGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTCATGCACTATCTCTGCCGCAAATGCGCCTCGCAGCCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCTTGGGACCTTCCTGGATTGGCTTCTTATGGGGAGAAAGAGTGGTACTTCTTTTCACCACGGGACCGGAAGTACCCAAACGGTTCGAGGCCGAACCGGGCGGCGGGAAGCGGTTACTGGAAGGCAACCGGAGCGGATAAGCCCATTGGTCACCCGAAAGCGGTTGGGATCAAGAAAGCTTTGGTGTTTTACGCTGGGAAAGCTCCGAAAGGGGACAAAAGCAATTGGATCATGCACGAGTATCGTCTGGCTGATGTAGATCGCTCCGTTCGCAAAAAGAACAGCCTAAGGGTATATGCACCGCACTTACATAATCCCTTCCCAGTTCAAGATTTATCCCCTGGACGGTCCCACTGGCTTTTCATGAAGCTGAGGATGATAATGATAATAATAATTCCCAAGGATAAGTCCAGGATTTTGGTGGAAAGCATGCAAAAATCTATGGTCCTGATATGTTATCCCCCACCTTTATCATGTGATGACAACCACGCGGAACCTTCACTATTGGATGATTGGGTGCTGTGCCGTATCTACAACAAGAAGGGCACGATCGAGAAATTACAACCGAGCAGTGATCCAGTTATGACCCGGAGAATCGAATCCCCGGAGATCGAAGAGAAGAAGCCGGAGATTCTGAAAAGCGGAGGAGTTCTTCCACCGGCGCCGGCGATGACGGACTACATGTACTTCGATCCGTCGGATTCAATCCCGAAGCTGCACACGGACTCGAGCTGTTCAGAGCAGGTGGTTTCGCCGGAATTCGCGAGCGAGGTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAGAAGAGCCTGGAGTTTCCATTCTACATGGATACCACTCTGAGCAACGGCTTCAACCAATTCGCGAGCAATAACAATAACACAAATAATAATAATAATAATCAGATGTCACCGCTGCAGGACATGTTCATACAGCAGCACGCATTGGCATTGCACGGCAGCACGAGACTGAAGGTCCATGAGTGTGCCTGTGCGAGGTCGCAGACGATAATTGATGAGTTGAGGCTTGGGCAGAGAAAGATCTAA 1191 0.508 MASELQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKAVGIKKALVFYAGKAPKGDKSNWIMHEYRLADVDRSVRKKNSLRVYAPHLHNPFPVQDLSPGRSHWLFMKLRMIMIIIIPKDKSRILVESMQKSMVLICYPPPLSCDDNHAEPSLLDDWVLCRIYNKKGTIEKLQPSSDPVMTRRIESPEIEEKKPEILKSGGVLPPAPAMTDYMYFDPSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKSLEFPFYMDTTLSNGFNQFASNNNNTNNNNNNQMSPLQDMFIQQHALALHGSTRLKVHECACARSQTIIDELRLGQRKI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02259 396 Gene3D NAC domain 16 174 IPR036093 GO:0003677|GO:0006355
Vimu10g02259 396 FunFam NAC transcription factor 16 152 - -
Vimu10g02259 396 ProSiteProfiles NAC domain profile. 7 228 IPR003441 GO:0003677|GO:0006355
Vimu10g02259 396 SUPERFAMILY NAC domain 4 133 IPR036093 GO:0003677|GO:0006355
Vimu10g02259 396 PANTHER NAC TRANSCRIPTION FACTOR 56 7 291 - -
Vimu10g02259 396 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02259 Vimu-Chr10 33052499 33054122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02259 1 146 NAC Transcription Factor Family AT1G01720 91.156 2.36e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g02259 NAM 6.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02259 - - cmax:111477085 342.813