Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02257 ATGGAAGGTGATGAGGGAAAACAGTGCTCCCAAAACCCTTACGTTGAACTAGAAGAAGTTGAGTTCGATTTTATTCTAGCATTGAGCATGCAGGAACACGAGAGAGAGTTCACAATGCTTTCAACCATTGAAAGCGAAAGTGATGAATATCTGAGTGACTCCTCTATTGATAATGATGATGATGATGGTGATCCTGACTTCGTAGAGAGTCATGAGTTTGACTCTGATCTTCAGTTTCTTGAAGATGAAGAAAGCAATGATAACGATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAATGGAAGTGGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAGTTAATGGAGTTGGGAGAGTTTATAGGAGAAGAAACGAGAGGATTATCCGAAAATGAAATCTCTATGTGCTTGAACCCTTATACTTGGCAACATGGTGAAAGAAAAAGTGGAATCGATCGCTGTGTGATTTGTCAGGTTGAATATGAAGATGATGAAGCATTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCCATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCCAACACTTAA 639 0.3897 MEGDEGKQCSQNPYVELEEVEFDFILALSMQEHEREFTMLSTIESESDEYLSDSSIDNDDDDGDPDFVESHEFDSDLQFLEDEESNDNDDDDDDDDEEEEEMEVEEDEIDPDELSYEELMELGEFIGEETRGLSENEISMCLNPYTWQHGERKSGIDRCVICQVEYEDDEALVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNMASNT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02257 212 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 107 207 IPR043312 -
Vimu10g02257 212 Pfam Ring finger domain 158 199 IPR001841 -
Vimu10g02257 212 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Vimu10g02257 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 209 IPR013083 -
Vimu10g02257 212 FunFam E3 ubiquitin ligase BIG BROTHER-related 125 206 - -
Vimu10g02257 212 SUPERFAMILY RING/U-box 158 206 - -
Vimu10g02257 212 SMART ring_2 159 199 IPR001841 -
Vimu10g02257 212 MobiDBLite consensus disorder prediction 76 112 - -
Vimu10g02257 212 MobiDBLite consensus disorder prediction 50 69 - -
Vimu10g02257 212 MobiDBLite consensus disorder prediction 44 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02257 Vimu-Chr10 33013752 33014390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02257 106 203 C3H Transcription Factor Family AT3G63530 50.495 3.19e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02257 K19045 - gmx:100526881 297.745