Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02255 ATGGCAGTGGGAAAGAACAAGAGGATATCGAAAGGGAAAAAGGGTGGCAAGAAGAAGGCCGCTGATCCTTTTACCAAGAAGGATTGGTACGACATCAAGGCTCCTTCTGTGTTTCAGGTCAAGAATGTTGGCAAGACTCTCGTCACTCGCACTCAGGGCACCAAGATTGCTTCGGATGGACTCAAACATCGAGTGTTTGAGGTTTCGCTGGCTGATCTTCAAGGTGACGAGGACCATGCGTTCAAGAAGATTCGTTTGAGGGCTGAGGATGTTCAAGGGAAAAATGTTCTGACCAACTTCTGGGGAATGGATTTCACAAACGACAAGTTGAGGTCATTGGTGCGAAAATGGCAAACTTTAATTGAGGCTCATGTCGATGTGAAAACCACTGATAATTATACTTTGAGGATGTTCTGTATTGGGTTTACTAAGAGGCGAAGTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAGTTAGGCAGTTCCGAGATTCTCTTTCTGATCTTGAGAATTGGAGATTGGGTTTTGCCTCTTGTTATCTTATATCATTACATATTCGAAGGAAGATGAGGGAGATAATGATCAACCAAGCAACATCCTGCGATTTGAAAGAACTGGTCCGTAAGTTCATCCCTGAGATGATTGGAAAAGAGATTGAGAAGGCAACTTCCAGTGTCTATCCTCTGCAGAATGTGTTCATTCGTAAAGTCAAAATCCTGAAAGCTCCGAAGTTTGATCTAGGGAAACTGATGGAGATTCATGGAGATTACTCAGAAGATATTGGTACAAAAATGGATAGGCCTGCTGACGAAACAGTGGTTGAGGGAGCCACTGAAGTGGTTGGAGCTTGA 858 0.4394 MAVGKNKRISKGKKGGKKKAADPFTKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTNDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVRQFRDSLSDLENWRLGFASCYLISLHIRRKMREIMINQATSCDLKELVRKFIPEMIGKEIEKATSSVYPLQNVFIRKVKILKAPKFDLGKLMEIHGDYSEDIGTKMDRPADETVVEGATEVVGA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02255 285 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g02255 285 MobiDBLite consensus disorder prediction 1 15 - -
Vimu10g02255 285 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vimu10g02255 285 Hamap 40S ribosomal protein S1 [RPS3A]. 1 282 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vimu10g02255 285 Pfam Ribosomal S3Ae family 187 245 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vimu10g02255 285 Pfam Ribosomal S3Ae family 16 170 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vimu10g02255 285 SMART Ribosomal_S3Ae_2 15 245 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vimu10g02255 285 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02255 Vimu-Chr10 33010135 33012126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02255 1 285 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 75.874 1.13e-154 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02255 K02984 - gmx:100805519 448.743