Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02228 ATGCCACGACAATCGCCACCGTCACAGCCGCAGCAGCCCAGCAAACTGGAGCCGGCTATATGGCAAGTCTGTGCTGGACCGTCTGTGCAAATCCCGGAGCCAAATTCTATGGTTTACTACTTTCCTCAGGGACACTTTGATCAAGCCTCTTCTGCACCAAAGAACCTCTCCCCTCATCTTCTGGCCAAACCCTCCATTATCTGCACTGTCGTCTCGGTTAAATTTCTTTCCGATCCTCTTACGGACGAGGTTTTCACCAAGATGGTTCTCCAACCTGTTGGTAATAATCTTGCTGCGGAAGCCTTCCATATTCCTGCTCCTTCTCCTCCTCCTCCGCCAAATGACGACGGGGTCGTTTGGTTCCCCAAGATTCTCACGCCGTCTGATGCCAACAACGGCGGGGGCTTCTCCGTGCCTAGGTTTTGCGCCGACTCTGTCTTTCCGAAGCTGAACTTTGACGCCGACCCGCCCGTGCAGAACCTCTCTGTCACGGACGTGCACGGCTTCACCTGGGAGTTCCGTCACATTTATCGTGGGACGCCGCGCCGTCACTTGCTCACCACTGGCTGGAGCACGTTCGTCAACAACAAGAAGCTGGTCGCTGGGGACTCTGTCTTGTTTATAAAGAGCGCCGGACGTTTGTTTGTCGGAATTCGCCGCGCCACACGTTTATCTTCTGAAAGGGTCAACTGTCCGAAGCTGTTAATTGAGGAGGAGGACAAAGAAGAAGAGGAAGAAGACGAAGAGAAGGTGACGAGGGTTTTCAAGAGGGACGGGAAGGGGAAGCTGCCGGCTAAGGCTGTTGTGGAGGCGGCGGAGTTGGCTGCGCGACAAATGCAGTTTGAGGTTGCTTATTATCCCAAGGCTGGTTGGTATGCGTTCGTGGTGAAGACTGAGGTGGTGGATGCAGCTATGAGGTTTCCATGGAGCGTAGGAATGAGAGTGAAGATGTCTGCGGAGACAGACGATTCATCCCGGATGACGTGGTTTCAGGGTACCGTCTCTGCTGTCTTATCCTACGATAATGGCCAATGGTGCGGCTCGCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGCCGCGGAATGCAAAGTGGGTTAGCCCTTGGCAGGTGGAACCTGTTTCCCCCCCACCCGTCCTTCATCCAGCATTCCCCCCAGCAAAAAGGCTCAGAACTGCTGATGGTTATGGGGTGTTGACTAATGGAGAGGGAGGAACCTTTTCTGTGGCCAGAGTCACTGATTCAGCAATGGTACACCTGAATCAGGCATATTTGAGTTATAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTCCCAATTATCCAAGGGACATGTCTCATCCGTGTATCGATAATTCCTTTGGGAACAACACATTTTCAAGGCAGACAAATTTGCCGACAGAACTACATGTTGGCGGCAACTCTCAATCTGATGAATTATCACCAGATAGTAGTTTCCATTCCTGTGTCACAGACACTCTTGGGAATACCAACAACTTAATAAAACCTGCGCCCGATTCATTTCAGCTATTTGGTGCAGTCATTCGGAAAGAACAACCTGCTCAAAATGATTTAACAGGCACTGATTGCGCTAACACAGGAGATAAAGCCCTTGACAGATGA 1659 0.513 MPRQSPPSQPQQPSKLEPAIWQVCAGPSVQIPEPNSMVYYFPQGHFDQASSAPKNLSPHLLAKPSIICTVVSVKFLSDPLTDEVFTKMVLQPVGNNLAAEAFHIPAPSPPPPPNDDGVVWFPKILTPSDANNGGGFSVPRFCADSVFPKLNFDADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFIKSAGRLFVGIRRATRLSSERVNCPKLLIEEEDKEEEEEDEEKVTRVFKRDGKGKLPAKAVVEAAELAARQMQFEVAYYPKAGWYAFVVKTEVVDAAMRFPWSVGMRVKMSAETDDSSRMTWFQGTVSAVLSYDNGQWCGSPWRMLQVTWDEPEGPRNAKWVSPWQVEPVSPPPVLHPAFPPAKRLRTADGYGVLTNGEGGTFSVARVTDSAMVHLNQAYLSYSTFPAGMQGARHDVFSASSFPNYPRDMSHPCIDNSFGNNTFSRQTNLPTELHVGGNSQSDELSPDSSFHSCVTDTLGNTNNLIKPAPDSFQLFGAVIRKEQPAQNDLTGTDCANTGDKALDR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02228 552 CDD B3_DNA 123 220 IPR003340 GO:0003677
Vimu10g02228 552 SMART B3_2 121 222 IPR003340 GO:0003677
Vimu10g02228 552 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 532 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu10g02228 552 Gene3D - 309 379 - -
Vimu10g02228 552 ProSiteProfiles B3 DNA-binding domain profile. 121 222 IPR003340 GO:0003677
Vimu10g02228 552 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu10g02228 552 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Vimu10g02228 552 Gene3D - 118 222 IPR015300 -
Vimu10g02228 552 FunFam Auxin response factor 119 222 - -
Vimu10g02228 552 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02228 Vimu-Chr10 32661978 32665017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02228 15 548 B3 DNA Binding Superfamily AT1G77850 44.964 8.63e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu10g02228 B3 1.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02228 - - gmx:102662128 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02228 10 32661978 32665017 Vimu10g02228 10 32661978 32665017 ECH
Vimu1g01760 1 18877163 18880066 Vimu10g02228 10 32661978 32665017 PCT