Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02220 ATGATAATTGCTGCCAACGAGGGCTGGAGCAACAAGGACGGAGGAGGGACTTTCACTAGGGTGGATGTGATATGGACTAAAAGGATTTTGGAATTTTCATCGGACCCTAGGTTGGACGTGTTAGAAGCTGAGCCTGACATGTCAGAGAATGGCTCTGATACCATAAAAGGAAAGACAGAGGGAATATTGGAACAAATTTGGGGGCAATCCAAGTCATGCGAGGGTCGTCGATGTGGCACCGCGTTTTGTGTTTCCAGTTCAACGACTCTTTCTTCACTTTCTATTTCGATCAATCCCCCATTCCTCTCTGGTCAGCTCCGTTTACTTTGTCCCTCTTCTCGCGCATGGATTCAGATGAATCACCTATCTCGGATTTTTGAGCACCGCAACCGCACCAAAGCCATGGATCAGAAAAACCCGCGGAGGAAGCCCAAGCTCGAGCGCCGCAACGCTCTCAAGTACTCTGAATACGACTCCGGATCATCTACCTCCGACGAAGCGCTCTACACGCGCTCCATGGAGTTCTATGACCGCACCAGCTTCCGAATCGAGGGCGTCGAGGGAGAGTTCGATCGAATTTGTAGGAGTTTGGGTCTCTCCGGCCCAGAAGACTTCTCTATTCCCGCTGCGGCCTGGGAAGCCATGAAGTTTCGTTCCTCTTCCGATATCCTCCCGAGACTGAAGCTCGAAAACCTCGATATTCCCGAGGAAGAGGAAGAGGATGAAGAAGAAGAAGTACGGAACATAAACGAGGAGGGAATACTAAAACTACCAGAGGATGGTGAATTTAGTGAAAAATTAGGAGATGGGGTTAGGGTTTTGGAGGCAGATGAGTCGACCACTGGTATTAAGGGTGTTCGTCCGCCGAAGCTGAAGCCGCCGCCGGGGGTTAGAGTTCAGTTGGTGGATGATAGCTCGTGTTCCACGTGGGACCTTTTGAGGGATTTGGCTCCGATAGGTGAAGGGTTATCGTTGAAGCACTCTGAGCATACGAGGGATGTAGAGAATGATGCACCGCTAGGGGTAGTAGAGAGGGAGCTATCGAAGAAAGAAGAAGGGGAAGTGGGTAGAGCGAGCCCGAAGAGGGAAGAGGAAGAGAATGTGGATAATGCAGCGAGGATTGCGGAGATCGTGGCTGGGCTTTCGGAATCATGTTCGTTTTCCACGTCGAACGAAGATGATTCTTCTAGTAGTACAACGGATCACACCCCCAACAATATTTCTCCGCAAGGGAGAATCAAGCGGATTATTACCGCCGGAAGTTGGCAGAAGGGTGAGTTTCTTGGGGGTGGCTCGTTTGGCACCGTTTATGAAGGAATTTCTGATGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCATTGCTTGATCAGGGGACTCAGGGAAAGCAAAGTGTATATCAGCTGGAGCAGGAAATAGCACTTTTGAGTCAGTTTGAGCATGAAAATATTGTTCAATATTATGGCACAGAAATGGATGAATCAAAGCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCCCTTAGAAGCCTCTACCAAAAGTATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTATGAAGTATCTTCATGATCGAAATGTGGTTCACAGTTCTATTGCTCTTGCTTTCCTTTCTTCAAAAGAACTTTCACTTTTGCCTCCTAATAATCTTGGGGGAGAAGGTGTCCAATTATTTCCGTGCCTCAAACTACTACCTTTTGATGCTAATGGTCCTGTCAGGTTGAATGGTTACATGTGGGAAATTTCAGTTTTGGAGTTTTCAGTAGCAGATGGGGATATCAAATGTGCAAATATATTGGTGGATGCAAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCCAAGGCAACCAAAATGAATGACGTTAAATCAATGAAGGGTACAGCATTCTGGATGGCCCCGGAGGTTGTGAAAGGAAAGAACAAGGGATATGGGCTTCCAGCTGACATATGGAGTGTGGGATGCACTGTACTGGAGATGTTAACAGGCCAACTTCCGTACTGTGATTTGGAATGGGCATTATTTAGAATTGGAAAAGGTATTCGACCATCTATTCCTGACTCCCTTTCGAGAGACGCAACCGATTTTATCCTGCAGTGCCTTCAAGTTAATCCAAATGATCGTCCCACCGCTGCTCAACTTCTAAACCATTCATTTGTCCAAAGGCCACTTTCCCAGACCTCTGGTTCTTCATTTCCTCATGTTCTTGGCCGGAAGGCAAAGGTGGAGGATCAACTTCCAGTTGAAAAAGCTAACCTTGCATTCCACTCATTACCTGACAGGAGAAAAAACTATAGGGCTTGCTTAACTTAG 2355 0.4662 MIIAANEGWSNKDGGGTFTRVDVIWTKRILEFSSDPRLDVLEAEPDMSENGSDTIKGKTEGILEQIWGQSKSCEGRRCGTAFCVSSSTTLSSLSISINPPFLSGQLRLLCPSSRAWIQMNHLSRIFEHRNRTKAMDQKNPRRKPKLERRNALKYSEYDSGSSTSDEALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKFRSSSDILPRLKLENLDIPEEEEEDEEEEVRNINEEGILKLPEDGEFSEKLGDGVRVLEADESTTGIKGVRPPKLKPPPGVRVQLVDDSSCSTWDLLRDLAPIGEGLSLKHSEHTRDVENDAPLGVVERELSKKEEGEVGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTPNNISPQGRIKRIITAGSWQKGEFLGGGSFGTVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHSSIALAFLSSKELSLLPPNNLGGEGVQLFPCLKLLPFDANGPVRLNGYMWEISVLEFSVADGDIKCANILVDASGSVKLADFGLAKATKMNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSVGCTVLEMLTGQLPYCDLEWALFRIGKGIRPSIPDSLSRDATDFILQCLQVNPNDRPTAAQLLNHSFVQRPLSQTSGSSFPHVLGRKAKVEDQLPVEKANLAFHSLPDRRKNYRACLT 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02220 784 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 172 742 - -
Vimu10g02220 784 Gene3D Transferase(Phosphotransferase) domain 1 504 742 - -
Vimu10g02220 784 Pfam Protein kinase domain 423 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02220 784 Pfam Protein kinase domain 605 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02220 784 MobiDBLite consensus disorder prediction 131 154 - -
Vimu10g02220 784 MobiDBLite consensus disorder prediction 385 410 - -
Vimu10g02220 784 Gene3D Phosphorylase Kinase; domain 1 408 503 - -
Vimu10g02220 784 MobiDBLite consensus disorder prediction 329 368 - -
Vimu10g02220 784 ProSitePatterns Protein kinases ATP-binding region signature. 428 450 IPR017441 GO:0005524
Vimu10g02220 784 SMART serkin_6 422 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02220 784 FunFam Mitogen-activated protein kinase kinase kinase 19 631 746 - -
Vimu10g02220 784 SUPERFAMILY Protein kinase-like (PK-like) 422 668 IPR011009 -
Vimu10g02220 784 Coils Coil 232 252 - -
Vimu10g02220 784 ProSiteProfiles Protein kinase domain profile. 422 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02220 784 MobiDBLite consensus disorder prediction 131 163 - -
Vimu10g02220 784 SUPERFAMILY Protein kinase-like (PK-like) 606 739 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02220 Vimu-Chr10 32561838 32569981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02220 122 738 MAP Kinase Kinase Kinase AT4G08500 43.446 7.04e-144 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu10g02220 Pkinase 1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02220 K13414 - gmx:100819999 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02220 10 32561838 32569981 Vimu10g02220 10 32561838 32569981 ECH
Vimu1g02276 1 33015773 33024658 Vimu10g02220 10 32561838 32569981 PCT