Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02214 ATGCAAAACGGGGAGCTTTTGTCCCCGGATCATGGCTTCCCCGTTAGGGTGATAATACCCGGTTTCGTCGGTGGCCGCATGGTGAAATGGTTGAAGCGGATCATTGTCTCTACCCAGCAATCTAAAAGCTATTACCATTACATGGATAACAGGGTGCTTCCATCTCACGTTGATGCCGAACTTGCCAATGCAGAAGGAGGTGGGAGAAAGGTGACACGTGTGGAGGTAACGCTGGACGGTGGTGAAACGTGGCAATTGTGCAGCGTGGAATGTCCGGAGAAGCCGAACAAGTATGGGAAGTACTGGTGTTGGTGTTTCTGGTCCTTGGAGGTGGAGGTTTTGGATCTTCTCGCAGCAAAAGAAATTGCGGTGCGAGCTTGGGACGAGGCCCTCAACACCCAGCCTCACAAACTAATCTGGAATCTTTTGGGAATGATGAACAACTGCTGGTTCAAAGTGAAGACGAACGTGTGCAAGCCCAAGAAGGGTGAGATTGGTATAGTGTTCGAGCACCCCACTCAACCAGGCAACCAATCTGGCGGATGGATGGAAAGAGAGAGGGAGCTGGAGATATCATCGGAGTCCAACCCATCCCTCAAGAAGAGTGTTTCCTCCCCATTCATGAACACATCCCCCAAAACATATTCCATCTCCCAAGTCAGAACACACAACAACAGAGATTCGGCTTGGATCATAGTCCGCGGCCATGTCTACGATTGCACCCGCTTCCTCAAAGACCATCCTGGCGGCGCAGATAGCATCCTCATCAATGCCGGCACCGACTGTACCGAGGAGTTCGAAGCCATTCACTCCGAAAAAGCCATGGAAATGCTCCAAGACTACCGAGTCGGTGACCTCATGACCACAGACTACACCTCTGACTCCTCCATACATGGCAATTCTGAAACCACCCACATGGCCCCAATCAGAGAAGTGGCTCTCAACCCACGCGAGAAAATCCCATGCAAGCTCCTCTCCAGAACCTCCATCTCCAACGACGTCAGGCTCCTCCGCTTTGCGTTACCCAGCGAGGACCAGCTGATGGGTTTGCCAGTCGGGAAGCACGTATTCTTATGTGCCACTGTCGACGAGAAGATATGCATGCGAGCCTACACCCCCACAAGCAGCGTAGATGAAGTGGGTATCTTTGACCTCGTGGTCAAGGTTTACTTCAAAGGAGTGCATCCCAAGTTCCCCAACGGTGGGAAAATGTCTCAACACTTGGACTCGCTCCCCATTGGCTCTGTTTTGGACGTGAAAGGGCCACTAGGCCACATAGAATACACAGGCAGAGGAAACTTCCTGGTCGAGGGGAAGCGTAGGTATGCGAAGAGGCTAGCCATGTTGGCTGGTGGCACCGGGATCACACCCATCTACCAAGTGGTTCAGGCCATTCTAAAGGACCCAGAGGACCACACGGAAATGCATGTGGTATACGCGAATCGAACCGAGGATGATATATTGCTGAGAGAGGAGCTTGATGAATGGGCTAAGAAACATGACAGGGTGAAGGTGTGGTACGTGGTGCAAGAAAGCATAAGAGAAGGGTGGGAATACAGTGTGGGGTTCATCACCGAGAGTATCCTGCGAGAGCATCTTCCACCTGCATCTCCTGATACCTTAGCGTTAACTTGTGGTCCACCTCCCATGATTCAGTTTGCGGTGCAACCCAATTTGGATAAGTTGGGCTACGACATCCATAAAGACTTGCTCGTGTTTTAG 1722 0.5157 MQNGELLSPDHGFPVRVIIPGFVGGRMVKWLKRIIVSTQQSKSYYHYMDNRVLPSHVDAELANAEGGGRKVTRVEVTLDGGETWQLCSVECPEKPNKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDEALNTQPHKLIWNLLGMMNNCWFKVKTNVCKPKKGEIGIVFEHPTQPGNQSGGWMERERELEISSESNPSLKKSVSSPFMNTSPKTYSISQVRTHNNRDSAWIIVRGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAIHSEKAMEMLQDYRVGDLMTTDYTSDSSIHGNSETTHMAPIREVALNPREKIPCKLLSRTSISNDVRLLRFALPSEDQLMGLPVGKHVFLCATVDEKICMRAYTPTSSVDEVGIFDLVVKVYFKGVHPKFPNGGKMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVEGKRRYAKRLAMLAGGTGITPIYQVVQAILKDPEDHTEMHVVYANRTEDDILLREELDEWAKKHDRVKVWYVVQESIREGWEYSVGFITESILREHLPPASPDTLALTCGPPPMIQFAVQPNLDKLGYDIHKDLLVF 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02214 573 Gene3D - 65 205 - -
Vimu10g02214 573 PRINTS Eukaryotic molybdopterin domain signature 24 37 IPR008335 GO:0016491
Vimu10g02214 573 PRINTS Eukaryotic molybdopterin domain signature 8 21 IPR008335 GO:0016491
Vimu10g02214 573 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 212 287 IPR001199 -
Vimu10g02214 573 Gene3D - 1 64 IPR036374 -
Vimu10g02214 573 PANTHER NADH-CYTOCHROME B5 REDUCTASE 197 568 IPR001834 GO:0016491
Vimu10g02214 573 SMART Cyt_b5_2 215 287 IPR001199 -
Vimu10g02214 573 FunFam Nitrate reductase 61 206 - -
Vimu10g02214 573 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 243 250 IPR018506 GO:0020037
Vimu10g02214 573 FunFam NADH-cytochrome b5 reductase 308 423 - -
Vimu10g02214 573 FunFam Nitrate reductase [NADH] 424 573 - -
Vimu10g02214 573 CDD cyt_b5_reduct_like 322 565 - -
Vimu10g02214 573 FunFam Sulfite oxidase, mitochondrial 210 291 - -
Vimu10g02214 573 SUPERFAMILY Riboflavin synthase domain-like 310 429 IPR017938 -
Vimu10g02214 573 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 2 63 IPR036374 -
Vimu10g02214 573 Gene3D - 208 292 IPR036400 -
Vimu10g02214 573 Pfam Mo-co oxidoreductase dimerisation domain 65 157 IPR005066 GO:0016491|GO:0030151
Vimu10g02214 573 Pfam Oxidoreductase molybdopterin binding domain 2 45 IPR000572 -
Vimu10g02214 573 Pfam Oxidoreductase NAD-binding domain 448 555 IPR001433 GO:0016491
Vimu10g02214 573 SUPERFAMILY E set domains 65 157 IPR014756 -
Vimu10g02214 573 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 317 429 IPR017927 GO:0016491
Vimu10g02214 573 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 416 565 IPR039261 -
Vimu10g02214 573 Gene3D Translation factors 309 423 - -
Vimu10g02214 573 Gene3D - 424 572 IPR039261 -
Vimu10g02214 573 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 210 292 IPR036400 -
Vimu10g02214 573 PRINTS Cytochrome B5 reductase signature 348 359 - -
Vimu10g02214 573 PRINTS Cytochrome B5 reductase signature 447 466 - -
Vimu10g02214 573 PRINTS Cytochrome B5 reductase signature 485 496 - -
Vimu10g02214 573 PRINTS Cytochrome B5 reductase signature 414 428 - -
Vimu10g02214 573 PRINTS Cytochrome B5 reductase signature 541 549 - -
Vimu10g02214 573 PRINTS Cytochrome B5 reductase signature 369 376 - -
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 473 482 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 485 496 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 246 256 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 369 376 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 541 549 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 447 466 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 517 533 IPR001709 GO:0016491
Vimu10g02214 573 PRINTS Cytochrome B5 signature 237 247 IPR001199 -
Vimu10g02214 573 PRINTS Cytochrome B5 signature 262 269 IPR001199 -
Vimu10g02214 573 PRINTS Cytochrome B5 signature 247 261 IPR001199 -
Vimu10g02214 573 PRINTS Cytochrome B5 signature 274 286 IPR001199 -
Vimu10g02214 573 Pfam Cytochrome b5-like Heme/Steroid binding domain 218 286 IPR001199 -
Vimu10g02214 573 Pfam Oxidoreductase FAD-binding domain 322 428 IPR008333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02214 Vimu-Chr10 32495659 32498521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02214 310 564 NADPH P450 reductases AT5G17770 38.372 3.49e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02214 K10534 - gmx:732634 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02214 10 32495659 32498521 Vimu10g02214 10 32495659 32498521 ECH