Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02206 ATGGAGAATTTGCAAAGTGCTCTTAAAGATTATAGCTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGTTCTCTCTTCGCTTCAAGGGATTTCTATCCAGGTCTCTCTCACTTTAGTTCCAACAAGTTTTCTGGCTTCATTCATTACTTGATTGTGAGTTTAATGAGTTTAATCAATGTCAAATGCGTCGCTGATGTTGCAGGGGATGTGATTATAGGCCAAGAACCTTATATTTGTGTTTCAAACAACTCCTCACTTTCCACCCCTAAAAGGTGTGATGGATGTTTCATTACATCTAATGTCCTTAGAAGGTGCTCACGTTGCCATGTTGCATACTATTGCGGAACCGCATGTCAGAGGTCAGAGTGGGAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCAAGGCTTGAGAAGGATAAGAGAAAATCTGTCACGCCATCCATACGGCTGATGGTGAGACTTTATCTACGGAGGAAGTTGCAAGATGATAAGGTTATCCCAAGCACTGCTATGGACAATTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGATATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTATATTCTATATTGCAATGGCCGGAAATCAATATAAAAGAGATTGCAGAAAACTTTTCTAAGTTTGCATGTAATGCTCATACTATTTGTGATAGTGAGTTAAGACCTGTGGGAACAGGATTGTATCCCGTAATTTCCATAATCAATCATAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCATTGGTACGTGCTGTGCAACATATACCCGCAGGTACTGAGGTAGTGATAAGTTATATAGAGACTGCTGGAAGCACAATAGCTCGACAGAAGGCTCTCAAAGAGCAGTATCTATTCACTTGTACATGTCCCCGCTGTTCTAAAATGGGCCAGAAAGATGATATACAAGAAAGTGCAATTTTAGAAGGATATAGATGCAAAAATGAAAAATGTGGTGGTTTCTTGCTTCGAACAACCGATGGGAAAGGATTTCAATGCCAAGGTTGCCAACTAGTTATGGGCAAGGAGGAGATAAAGGAAATTATAACTGAAATTGAATTGCTATCTGAAGAAGCAGCTTCTAAATCTTCTTTCTCTTGCAGTTATCAAGAAGTTATTTCCATTTATAAAAAGATTGAGAAACTGCAAACAAAGCTCTATCATCCTTTCTCGATTAGTTTGATGCAAACTCGAGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACACTGGACTGAAGCTTTAGCATATTGCAAATTGACCATTCCATTCTATGAAAAAGTGTATCCATCTGTTCACCCTCTGCTTGGATTGCAATATTATACTTGTGGAAAACTAGAATGGTATTTGGGAGAGACAGAGGAAGCTGTTAAATCACTGACCAAGGCAGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCCTCTTACAAATGCTCCTCCATACACTGCTAG 1560 0.4058 MENLQSALKDYSLSVSTVPEKGRSLFASRDFYPGLSHFSSNKFSGFIHYLIVSLMSLINVKCVADVAGDVIIGQEPYICVSNNSSLSTPKRCDGCFITSNVLRRCSRCHVAYYCGTACQRSEWELHRLECEVLSRLEKDKRKSVTPSIRLMVRLYLRRKLQDDKVIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYSILQWPEINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVQHIPAGTEVVISYIETAGSTIARQKALKEQYLFTCTCPRCSKMGQKDDIQESAILEGYRCKNEKCGGFLLRTTDGKGFQCQGCQLVMGKEEIKEIITEIELLSEEAASKSSFSCSYQEVISIYKKIEKLQTKLYHPFSISLMQTREKILKSLMELEHWTEALAYCKLTIPFYEKVYPSVHPLLGLQYYTCGKLEWYLGETEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARAEASYKCSSIHC 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02206 519 Gene3D - 143 227 - -
Vimu10g02206 519 SUPERFAMILY TPR-like 387 484 IPR011990 GO:0005515
Vimu10g02206 519 Gene3D Tetratricopeptide repeat domain 439 518 IPR011990 GO:0005515
Vimu10g02206 519 ProSiteProfiles SET domain profile. 11 285 IPR001214 GO:0005515
Vimu10g02206 519 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 505 - -
Vimu10g02206 519 Gene3D - 91 142 - -
Vimu10g02206 519 SUPERFAMILY SET domain 12 284 IPR046341 -
Vimu10g02206 519 Pfam MYND finger 92 130 IPR002893 -
Vimu10g02206 519 ProSiteProfiles Zinc finger MYND-type profile. 92 130 IPR002893 -
Vimu10g02206 519 Gene3D SET domain 67 311 IPR046341 -
Vimu10g02206 519 ProSitePatterns Zinc finger MYND-type signature. 92 130 IPR002893 -
Vimu10g02206 519 Pfam SET domain 213 284 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu10g02206 SET 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02206 K11426 - gmx:100789518 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02206 10 32377488 32384162 Vimu10g02206 10 32377488 32384162 ECH