Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02205 ATGGATGGGAAGCCTAACCCGGATTCCTCCTCTCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGGCACCGTCCACTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTACTTCCACAACGGAAGCTATCTAACACTCCCTCCGACCCCACCAATTCTCAAGAACAAGCTTCTTCCAAGGTCTCACTCAACACCGTCGTCCCTTCCCAAAACCTAGACGTTCAGAAGAAAGATCAATTTTCAGTTCACACGAATTCTACTGCGCAGGATGCTAAGGCCACCACTGAGTTGGAGAATTTATCGTCTCACATGGGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCGTCATCATCATTGGTAGGAGGCAAACAGAAGGGGGATGTTCAGCAGGCTGGCTTTGACGCGAGTTTGAGATGTGACAGTGGAGTGAGTTCCATGTTGCCAAAGAGAAGCGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGCTTTCTGAGTCAGCCAGCTACCCAGTCTTCGGTTTTGGGACCTTCATGTGCTACAACAACCTCAGTTCATTCAACTTCGGCACCTATGTTAAATTCAACAACACGATATTCTCATTCGCATCTAGACGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAATCCTCGTCCTGTAACTGAAGGGGTTGTGAAATCAGTAAATGTTTTCCAAAAGGAAACCAACAGAATGTTGGTGGATCGGGGAGCAGAAGCTGAAGTGCCGGCCTCTGATCTTGGTATTGGTGATGCAGAATTGGTGTCTAAGGAGAGCAATCGGTCTACGGAGCAACAAGGGGGGATTTTGAAAGAATCTGGCAATTCTAAATATACTTGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTACACAACCGCAGGTACTACCTCCCACATTCACAACCACATCTTCAGATGTGAAGTTGGAGTCTTCTAAGGTAGAAAAGCGAGAGAAGATTGCAAGTAGTAAAGGTGCATCAGCTCCCCGTAAGAGGACTTATGACCCTGATTTGTTTTTTAAAGTTAATGGAAAGCTTTACCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATATGCCCTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATTGAGTATCTCAATAGGCTGAAGGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCTTTAAGTAATAGAAATGGCCGGGTCAAGGATGATGGATGTATATACATGGTCCTTGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGAGCCACCGGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAATACTATTCATGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCGAATGGAAACGTCATAAAGTGTGGCCGGTCATCAGATATATGGTCCCTGGGTTGCATTCTTTATCAAATGGTATATGGGAGAACGCCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAGGTCATAACAGATCCACATCATGAAATTACTTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGATGAGGTGTTTAACATGGGACCGCAATCAAAGGTGGAGAATACCTCAGCTACTGGAACATCCTTTTCTTGTTCCTCCTGTACCATCTCATCCATCTTTGCCCCAAGATAATAATAGCTGTAAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTGAACTGTGTAGTAAGCTCCAACGGCTTCTAAGTGATTCAGTCAACAAAACAACTCACTCACTAAATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGACAGATATGTGTATTCAGCTGCATGAACGTTTGAGAAATACTGGAAACAAGTAG 2262 0.4403 MDGKPNPDSSSPDFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRKLSNTPSDPTNSQEQASSKVSLNTVVPSQNLDVQKKDQFSVHTNSTAQDAKATTELENLSSHMGSLGFAEMEWVEGNQIEASSSSSLVGGKQKGDVQQAGFDASLRCDSGVSSMLPKRSVVTQDHLQQFSSFLSQPATQSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLDGGSNVTAEPFGEVNANPRPVTEGVVKSVNVFQKETNRMLVDRGAEAEVPASDLGIGDAELVSKESNRSTEQQGGILKESGNSKYTWDDGKGKEAVDVATTQPQVLPPTFTTTSSDVKLESSKVEKREKIASSKGASAPRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLSNRNGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHRTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNVIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPHHEITYEPVSNPWLLDLMMRCLTWDRNQRWRIPQLLEHPFLVPPVPSHPSLPQDNNSCKLLQHISETCTYDPEVSELCSKLQRLLSDSVNKTTHSLNSRDQQLKLLSQMTDMCIQLHERLRNTGNK 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02205 753 MobiDBLite consensus disorder prediction 337 359 - -
Vimu10g02205 753 SUPERFAMILY Protein kinase-like (PK-like) 369 678 IPR011009 -
Vimu10g02205 753 SMART serkin_6 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02205 753 FunFam serine/threonine-protein kinase mph1 isoform X2 368 455 - -
Vimu10g02205 753 MobiDBLite consensus disorder prediction 24 68 - -
Vimu10g02205 753 PANTHER MIXED LINEAGE PROTEIN KINASE 36 701 - -
Vimu10g02205 753 Gene3D Phosphorylase Kinase; domain 1 368 455 - -
Vimu10g02205 753 MobiDBLite consensus disorder prediction 323 359 - -
Vimu10g02205 753 ProSiteProfiles Protein kinase domain profile. 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02205 753 MobiDBLite consensus disorder prediction 281 307 - -
Vimu10g02205 753 FunFam serine/threonine-protein kinase mph1 isoform X1 489 671 - -
Vimu10g02205 753 MobiDBLite consensus disorder prediction 284 298 - -
Vimu10g02205 753 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Vimu10g02205 753 CDD PKc_Mps1 373 668 IPR027084 -
Vimu10g02205 753 MobiDBLite consensus disorder prediction 28 68 - -
Vimu10g02205 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vimu10g02205 753 Gene3D Transferase(Phosphotransferase) domain 1 489 670 - -
Vimu10g02205 753 Pfam Protein kinase domain 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02205 Vimu-Chr10 32372709 32375797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02205 381 669 MAP Kinase Kinase Kinase AT4G08470 28.571 4.42e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vimu10g02205 Pkinase 2.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02205 K08866 - gmx:100788990 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02205 10 32372709 32375797 Vimu10g02205 10 32372709 32375797 ECH