Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02200 ATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCAGAAGGGTTTCGGATTCATAACTCCCCAGGACGGCTCCGAAGATCTCTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCGAGGGCCAGTCTGTCGAGTTCCTACTCGATTACGGCGACGACGGCCGTGCCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGCCGTCCAGGAGGTTTTCGCGGTGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAGGCCGTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGAGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCTAGGGATTGTTACCACGGACAGGGTGGTGGTGCTGGTGGTGCAGGTGGTGATGGTAGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGCGGCGGTGGTGGAGGAGGGTGTTATAACTGTGGGGAGGAAGGGCATTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGA 567 0.5961 MAETRRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVRSRRPGGFRGGSGRGRGRYGGGEGRGGGIGRRGAGGYGGGGGGPECYNCGRIGHLARDCYHGQGGGAGGAGGDGRIRRRGGGGGGGGGGGGGCYNCGEEGHFARECPNVGKLNE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02200 188 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Vimu10g02200 188 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 183 - -
Vimu10g02200 188 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Vimu10g02200 188 Gene3D - 163 186 - -
Vimu10g02200 188 FunFam Cold shock protein CspC 6 73 - -
Vimu10g02200 188 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Vimu10g02200 188 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Vimu10g02200 188 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Vimu10g02200 188 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Vimu10g02200 188 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Vimu10g02200 188 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Vimu10g02200 188 SMART csp_8 8 73 IPR011129 GO:0003676
Vimu10g02200 188 MobiDBLite consensus disorder prediction 77 105 - -
Vimu10g02200 188 Gene3D - 1 71 IPR012340 -
Vimu10g02200 188 Pfam Zinc knuckle 166 182 IPR001878 GO:0003676|GO:0008270
Vimu10g02200 188 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Vimu10g02200 188 ProSiteProfiles Zinc finger CCHC-type profile. 120 133 IPR001878 GO:0003676|GO:0008270
Vimu10g02200 188 ProSiteProfiles Zinc finger CCHC-type profile. 167 182 IPR001878 GO:0003676|GO:0008270
Vimu10g02200 188 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Vimu10g02200 188 Gene3D - 99 143 - -
Vimu10g02200 188 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Vimu10g02200 188 SUPERFAMILY Retrovirus zinc finger-like domains 109 183 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02200 Vimu-Chr10 32318732 32319298 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vimu10g02200 CSD 4e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02200 - - gmx:100815773 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02200 10 32318732 32319298 Vimu10g02200 10 32318732 32319298 ECH