Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02194 ATGAAACCTATCTTAACTCTCTCTTGCATTTTGTTTTTCTGCACTACCATTTCGGCTCGCACTTTTTCATATATCACTCCGAATTTCTCTGCCTCGTATCTTCATTTCATCGATGACTTTGGTACGTTCCTGGTGTCTCCCAATAACACATTCAAGGCTGCTATATTCAACCCAGGTGGTCAGCAAACAAGTTTCTACCTGTGTGTCATTCACGATGCGTCCAACACTATCATTTGGTCTGCTAACCGTGATGACCCCATCTCAGATTCTGGAAAAATGCTTTTAACTGTCAAAGGGATCACAATCGTCGACCACGATGGGCACACCAAATGGTCAACGCCATCACTCAAATCACAAGCAAATAGCCTTGTGCTGACCGAGATGGGAAATCTCGTCTTACAGGATACGTCCAATGGTTCTCTCTGGGAGAGTTTCCAAAGCCCAACCGATACAATTGTTGTTGGACAGCGTTTACCTGTCGGAGCGTCTTTGTCAAGTGCAGCATCGAATTCAAACTTGTCAACCGGAGATTTCAAGCTCACAATTTCTTCCTCTGATGCAGTGCTGCAATGGTATGGACAGACCTACTGGAAACTTTCAACTGATACAAAAGTTTTTAAGAATTCAAATAATATGGTGGAATACATGGCCGTAAACAATTCAGGGTTTTATCTATTTGGAGATGGTGGAACAGCTTTTCAACTGGGATTGCCACTGGCTAATTTTCGAATTGCCACGTTGGGTACCTCTGGGCAGTTCACCATCAACAGATTTTCTGACGCTGGCTTGACGCAGGAGTTTGTGGGGCCAGGTGATGGTTGTCAAACTCCCTTGGCTTGTGGAAGAGCAGGGTTATGCACTAAGAGCACTGATTCCTCTTCACCTGTTTGTTCTTGTCCCCCAAACTTCCGCGTAGGCTCAGGTACTTCTGGTGGTTGTGTGCTGAGCAATGGATCCCAGTCCTTGCCACTTGCTTGTGAAAATTCTTCAGTTGTTTCGTTTTCTAATATAGGGTATGTTCAATACTTTGGCACTTTTTACTCTGATCCGGTTATGTATAAAGGGGATTTATCTTCCTGTCAAAAATTTTGTTCCAATAACTGTTCCTGCTTGGGAATTTTGTATAAAAACACATCTGGTTCTTGCTACACGATTGAGAATGAGTTGGGGTCCATTCAGTCAAGTAATGGAGATAACAGAGACATGTTGGGGTTTATTAAAACAAAAGTTGTTGAATCTAAAACTGGTACTAACGATGATAGTGGTAACAAGCAAAGTTCTCAAAATGGGGGATTTCCTGTGGCAGTAGCGGTGGTGTTACCTATTATCGGATTCGTTATTTTGATGGCCATAATTTTCCTTGGGTGGAGAAGATTGATTCTTCTGTCAAAGATTAAAGAAGTGAAACTAGGGAAAAACTCACCTTCTTCAGGGGACTTGGATGCCTTCTACATTCCTGGATTACCTGCAAGGTTTGATTATGAAGAGCTTGAGGAAGCCACAGAAAACTTCAAGACTCTTATTGGGTCAGGTGGGTTTGGAACTGTGTACAAGGGTGTGCTTCCTGACAAATCTGCTGTGGCAGTAAAGAAAATAGTGAACATAGGCATTCAAGGGAAGAAAGATTTCTGCACTGAGATCGCTGTGATTGGAAACATCCACCACGTGAACTTGGTCAAACTGAAAGGCTTTTGTGCTCAAGGGAGACACCGGTTGTTGGTTTATGAGTACATGAACCGTGGATCCCTTGACAGAAACCTCTTCGGTGGTGGACCCGTGTTAGAATGGCAAGAGAGGTTTGATGTGGCGCTTGGAACAGCGCGCGGACTTGCTTACCTTCACAGTGGCTGTGAGCAGAAGGTTATCCATTGTGACATCAAACCCGAGAACATTCTCTTGCAAGATCAGTTTCAGGCTAAGATATCTGATTTTGGACTCTCCAAACTCCTCAGCCCCGAACAGTCTGGTCTGTTCACAACAATGAGAGGCACACGTGGTTATCTTGCTCCGGAGTGGCTCACCAACTCTGCCATTACAGAAAAAACTGACGTGTATAGCTTTGGAATGGTGCTTCTTGAACTTGTCAGTGGAAGAAAGAACTGTTATTTCAGGTCAAGAAGCCATAGCATGGATGAAAGCAACAGTGGTGGAGGCCATTCCTCGACATCATCAACAACTGGGTTGGTTTATTTTCCTCTATTTGCATTGGAGATGCATGAACAGAAGAGTTACCTGGAGTTGGCTGATCCAAGACTAGAAGGACGTGTGACATATGAAGAACTGGAGAAAGTGATTCGCATTGCCTTATGTTGCGTTCATGAAGAACCTGTACTGAGGCCAAACATGGTGACTGTTGTTGGCATGTTGGAAGGTGGGACTCCATTGCCACATCCAAGGATAGAATCTCTGAACTTCCTACGCTTTTATGGGCGAAGGTTTACTGAGGCTTCCACAATAGCTGAAGAAAATGAGTATGGTTCTTTGATGCATCAAGAAGCACGTAGATCTACAAGCATACCAAGTGATTCACCGTCCCATGGTTTTTCTTACATGTCTTCACAAAATATCTCAGGGCCAAGATAG 2583 0.4383 MKPILTLSCILFFCTTISARTFSYITPNFSASYLHFIDDFGTFLVSPNNTFKAAIFNPGGQQTSFYLCVIHDASNTIIWSANRDDPISDSGKMLLTVKGITIVDHDGHTKWSTPSLKSQANSLVLTEMGNLVLQDTSNGSLWESFQSPTDTIVVGQRLPVGASLSSAASNSNLSTGDFKLTISSSDAVLQWYGQTYWKLSTDTKVFKNSNNMVEYMAVNNSGFYLFGDGGTAFQLGLPLANFRIATLGTSGQFTINRFSDAGLTQEFVGPGDGCQTPLACGRAGLCTKSTDSSSPVCSCPPNFRVGSGTSGGCVLSNGSQSLPLACENSSVVSFSNIGYVQYFGTFYSDPVMYKGDLSSCQKFCSNNCSCLGILYKNTSGSCYTIENELGSIQSSNGDNRDMLGFIKTKVVESKTGTNDDSGNKQSSQNGGFPVAVAVVLPIIGFVILMAIIFLGWRRLILLSKIKEVKLGKNSPSSGDLDAFYIPGLPARFDYEELEEATENFKTLIGSGGFGTVYKGVLPDKSAVAVKKIVNIGIQGKKDFCTEIAVIGNIHHVNLVKLKGFCAQGRHRLLVYEYMNRGSLDRNLFGGGPVLEWQERFDVALGTARGLAYLHSGCEQKVIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGRKNCYFRSRSHSMDESNSGGGHSSTSSTTGLVYFPLFALEMHEQKSYLELADPRLEGRVTYEELEKVIRIALCCVHEEPVLRPNMVTVVGMLEGGTPLPHPRIESLNFLRFYGRRFTEASTIAEENEYGSLMHQEARRSTSIPSDSPSHGFSYMSSQNISGPR 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02194 860 CDD B_lectin 41 148 IPR001480 -
Vimu10g02194 860 SUPERFAMILY Protein kinase-like (PK-like) 480 789 IPR011009 -
Vimu10g02194 860 Gene3D Phosphorylase Kinase; domain 1 488 577 - -
Vimu10g02194 860 PIRSF SRK 1 842 IPR024171 GO:0004674
Vimu10g02194 860 CDD STKc_IRAK 508 791 - -
Vimu10g02194 860 Gene3D - 39 146 IPR036426 -
Vimu10g02194 860 MobiDBLite consensus disorder prediction 830 860 - -
Vimu10g02194 860 SMART serkin_6 502 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02194 860 FunFam Serine/threonine-protein kinase 578 797 - -
Vimu10g02194 860 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 200 IPR036426 -
Vimu10g02194 860 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 797 - -
Vimu10g02194 860 Gene3D Transferase(Phosphotransferase) domain 1 578 794 - -
Vimu10g02194 860 ProSiteProfiles Bulb-type lectin domain profile. 29 146 IPR001480 -
Vimu10g02194 860 Pfam Protein kinase domain 505 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02194 860 SMART blect_4 35 148 IPR001480 -
Vimu10g02194 860 CDD PAN_AP_plant 323 408 - -
Vimu10g02194 860 MobiDBLite consensus disorder prediction 829 860 - -
Vimu10g02194 860 ProSiteProfiles PAN/Apple domain profile. 326 409 IPR003609 -
Vimu10g02194 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vimu10g02194 860 FunFam serine/threonine-protein kinase PBS1-like 473 577 - -
Vimu10g02194 860 ProSiteProfiles Protein kinase domain profile. 502 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02194 860 ProSitePatterns Protein kinases ATP-binding region signature. 508 531 IPR017441 GO:0005524
Vimu10g02194 860 Pfam D-mannose binding lectin 76 159 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02194 Vimu-Chr10 32254772 32258087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02194 485 798 Receptor kinase-like Gene Family AT5G20050 41.590 4.43e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu10g02194 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02194 - - gmx:100305399 1319.68