Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02190 ATGGAAATAGACATGGACACAGACATCGATGCAATCCACAACCTCCACTTCTCCGGATACACTACCATCACCGACACCACCCCCTCTTCTGACGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCCTCGTCAACTGGGACGCCTTCACCGGATCCCACGATGATTTCCACCACCTCATCGACTCTATCGTCTCCGACGCTCCCACCGAGTACCCCAGCCCTGAAGACCACGCCGCCAGCAACTCCCCCTCCGCCTCCATAACCGAGGAAGATGACGCCGAGGAAGAAACAGCTGCCGCCGACGATTCCAAGGGCCTAAGACTGGTCCATCTGCTCATGGCCGCCGCGGAGGCCCTCACCGGCGCCACCAAGAGTCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGATTTGGTGTCCCACGCCTCGCACGGCTCCAACATGGAGAGGCTCGCCGCCTACTTCACCGACGCACTCCAGGGCCTGCTAGAAGGCGCCGGGGGTGCGCACAATAACAGCAAACATCATTACTACATCACGTGTGGGTCCCACCACCCCCGGGACGATCATCATCATCAAAACGACACCCTAGCGGCGTTCCAACTGCTTCAGGACATGTCTCCCTACGTCAAGTTCGGACACTTCACCGCCAACCAGGCCATCCTCGAGGCCGTGGCCCACGAGCGCCGAGTCCACATCGTGGACTACGACATCATGGAAGGGGTCCAGTGGGCTTCTCTCATGCAGGCCCTTGCCTCCGACAAAACAGGTCCACCGGGCCCACACCTTCGAATCACAGCATTGTCCAGAACCGGCACCGGACGCCGCTCCATCGCCAGCGTGCAGGAGACCGGGAGGCGGTTGACAGCGTTCGCCGCATCCCTTGGGCAGCCGTTCACGTTCCACCAGTGTAGGTTGGATCCCGACGAAACGTTTAAACCTTCGTCTCTGAAGCTGGTTCGCGGAGAGGCTTTGGTTTTTAACTGTATGTTAAACTTGCCGCACCTGAGTTACCGCGCGCCCGATTCGATTGCGTCGTTTTTGAGTGGAGCGAAAGAGTTGAAGCCGAGGCTGGTGACTTTGGTGGAGGAAGAGGTGGGGTCCAGTGTGGGAGGGTTCGTGGGAAGGTTCATGGACTCTCTGCATCACTACTCGGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGGGGCGGGCCAGGGCCCTTGTAGAGCGGATTTTCTTAGGCCCAAGGATAGTTGGCTCGCTGGCCCGGATATATCGGACGGGTGAAGAGCTGGAGGAGAGAAGGTCATGGGGGGAGTGGTTGGGTGCGGCAGGGTTCAGGGGAGTACCGATGAGCTTCGCCAATCATTGCCAAGCGAAGCTTCTACTGGGTCTTTTCAACGACGGATATCGGGTGGAGGAGTTGGGGACTAATAAGTTGGTGTTGGATTGGAAATCTCGGCGCTTGCTTTCTGCCTCCCTTTGGACTTCTTCTTCTTCCTCAGACTCCCATTAA 1512 0.5833 MEIDMDTDIDAIHNLHFSGYTTITDTTPSSDDDYGCNWNHWSPLVNWDAFTGSHDDFHHLIDSIVSDAPTEYPSPEDHAASNSPSASITEEDDAEEETAAADDSKGLRLVHLLMAAAEALTGATKSRDLARVILVRLKDLVSHASHGSNMERLAAYFTDALQGLLEGAGGAHNNSKHHYYITCGSHHPRDDHHHQNDTLAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPGPHLRITALSRTGTGRRSIASVQETGRRLTAFAASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYRAPDSIASFLSGAKELKPRLVTLVEEEVGSSVGGFVGRFMDSLHHYSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRTGEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFNDGYRVEELGTNKLVLDWKSRRLLSASLWTSSSSSDSH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02190 503 Pfam GRAS domain family 109 495 IPR005202 -
Vimu10g02190 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 92 490 IPR005202 -
Vimu10g02190 503 MobiDBLite consensus disorder prediction 68 94 - -
Vimu10g02190 503 ProSiteProfiles GRAS family profile. 100 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02190 Vimu-Chr10 32218279 32220457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02190 77 496 GRAS Transcription Factor Family AT5G41920 36.512 4.33e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu10g02190 GRAS 1.7e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02190 - - gmx:100787926 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02190 10 32218279 32220457 Vimu10g02190 10 32218279 32220457 ECH