Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02185 ATGTCGTTGAGTCCTCCGAGAGAGAGAAACAACGTCAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCGTCGCAGTGGATAACAATAACCCCTCAGAGGTCACGTGTCCGCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTTGTCGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGTCGCTTCCCGGGTCTCCTCCAACCCGAACCCGAAGAGGTCCCGGTTCATCACAACCGCCGCCGTCGCTTACGCCGCCGACAACCCGAACCCGAACCCGTCCCTGAACCCCCACAACCCCGACCTCGCACGTGGATCGTATTCCAGCCCATGGACTCACCCAACCCCTTCCTGCCCATTAACAACATTGCTAACCGCCCCGGCCCAGGCCCACTCCCATTCGCGCTCCCTCGCACCGTGGACACTCGCGACTATTTCTTGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAAAACGACAGACAGGGTCCCGCGCCGGCACCGGAGAGGGCTATCGAATCGATTCCGACGGTGGAAATTGCGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGTCCAGTGTGCCGTCACGAGGTTTCTGTGCCTCCTTCTTCGTCGTCGGAGGATGAGTGTGTTGATGTAAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAACTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGTGAATCATAA 999 0.5616 MSLSPPRERNNVNGRRRERPTFQMYWCFQCNRMVRVAVDNNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHNRRRRLRRRQPEPEPVPEPPQPRPRTWIVFQPMDSPNPFLPINNIANRPGPGPLPFALPRTVDTRDYFLGPGLNELIEQITENDRQGPAPAPERAIESIPTVEIASAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVSVPPSSSSEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGES 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02185 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 273 IPR013083 -
Vimu10g02185 332 PANTHER SI:CH211-59O9.10 110 272 - -
Vimu10g02185 332 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Vimu10g02185 332 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
Vimu10g02185 332 FunFam E3 ubiquitin-protein ligase RING1-like 189 273 - -
Vimu10g02185 332 SMART ring_2 226 266 IPR001841 -
Vimu10g02185 332 Pfam Ring finger domain 225 267 IPR001841 -
Vimu10g02185 332 MobiDBLite consensus disorder prediction 97 136 - -
Vimu10g02185 332 SUPERFAMILY RING/U-box 206 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02185 Vimu-Chr10 32099422 32100420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02185 198 316 C3H Transcription Factor Family AT1G68180 44.538 1.97e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02185 K11982 - gmx:100787399 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02185 10 32099422 32100420 Vimu10g02185 10 32099422 32100420 ECH