Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02180 ATGAAAGGAATTATTAAACAATTTTCTGACGTCTTTGAAGAAGATTTTCACAATAAACGATCCCCACCTCTGGTTAGGGTGGAAAAAATGCTTGAGTTCGTGCAATTTAAACTTCCAAGGCTTCCACAATTTCTTCTTTGTCTTCTTCCTGACAGGAAAATTTTTGAACTATATGGTAATGTATATTTCTCATCCTTAACTGTATTTTACTGCTTAGCATATTGTATAACGCCTCAAAGGGTCAATGATCACTATTTGACCAATGTTTTACTAAAGATCAATGCCAAGCTTGGTGGCTTGAATTCTATTTTAGGAGCTAAACATGCTCCTTCTATCCCAATTGTTTCCAGAGCTCCCACTATCGTTATTGGCATGGACGTGTCTCATGGCTCCCTAGGCCAAACCAATATCCCTTCAATTGCGTGA 426 0.3779 MKGIIKQFSDVFEEDFHNKRSPPLVRVEKMLEFVQFKLPRLPQFLLCLLPDRKIFELYGNVYFSSLTVFYCLAYCITPQRVNDHYLTNVLLKINAKLGGLNSILGAKHAPSIPIVSRAPTIVIGMDVSHGSLGQTNIPSIA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02180 141 ProSiteProfiles Piwi domain profile. 44 141 IPR003165 GO:0003676
Vimu10g02180 141 Gene3D - 3 105 - -
Vimu10g02180 141 Pfam Piwi domain 45 141 IPR003165 GO:0003676
Vimu10g02180 141 SUPERFAMILY Ribonuclease H-like 29 141 IPR012337 -
Vimu10g02180 141 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 20 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02180 Vimu-Chr10 32035962 32036635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02180 43 141 Eukaryotic Initiation Factors Gene Family AT5G43810 38.235 3.94e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02180 K11593 - gmx:100792105 183.341