Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02179 ATGGTTAAGTCAGAGCACAAGATCAAAACAGAACCATCATCAAAGGCAATGCGGTCTATATCCTCGTTATCAGCATCATCACCAGCACAAGCACCAGCACCAGATAGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGGTCTTGGGTTTCAGAGATCAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCAGAGGCTGCTGCTAGAGCCTATGATGCTGCACTTCTGTGCCTCAAAGGCTCCTCTGCTAATTTTAATTTCCCTTTAAGCTCTTCACAATATATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGACAATGCCACCATTCCCCCATCTGCATCTCCAGCTTCAACCTCATCATCATCGTTGGTCTCATCCCCCTCGATGGCCTATTCTCCATCGGATCAAGTCGATGATGATGCCTCACTGATATCGTCTCTGGAAACCCACACCAGTTATGATCAAGCAAATGAATCAATGGCTATGAATGAGATGGAACCTTGGTACACTTTAGATGATCTTCAATCCCCCAAGTATGTTGATCAGATGTTAAGTGGTGCTTTCTTTGATGTTGATTCGTCCCATCTGCTCGATGATCTATACGAAGAAAGCGACATCCGTTTGTGGAGCTTCTGCTGA 708 0.452 MVKSEHKIKTEPSSKAMRSISSLSASSPAQAPAPDSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANFNFPLSSSQYIPGDAVMSPKSIQRVAAAAANSFIDNATIPPSASPASTSSSSLVSSPSMAYSPSDQVDDDASLISSLETHTSYDQANESMAMNEMEPWYTLDDLQSPKYVDQMLSGAFFDVDSSHLLDDLYEESDIRLWSFC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02179 235 MobiDBLite consensus disorder prediction 133 160 - -
Vimu10g02179 235 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Vimu10g02179 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 175 - -
Vimu10g02179 235 MobiDBLite consensus disorder prediction 14 31 - -
Vimu10g02179 235 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Vimu10g02179 235 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Vimu10g02179 235 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Vimu10g02179 235 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Vimu10g02179 235 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Vimu10g02179 235 FunFam ethylene-responsive transcription factor ERF014-like 39 99 - -
Vimu10g02179 235 MobiDBLite consensus disorder prediction 1 44 - -
Vimu10g02179 235 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Vimu10g02179 235 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02179 Vimu-Chr10 32026765 32029191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02179 1 234 AP2-EREBP Transcription Factor Family AT1G21910 47.200 2.07e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g02179 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02179 - - pvu:PHAVU_009G123300g 357.451