Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02175 ATGGAACAACAGTACTGTCGTTGTGCTAGTTTTGGAACCAACTTCAGTAGGGCAAAGCCTTATTTGTTAACGGTCGGACTTCAATTTGGGTTCGCCGGAGCTCTAATCTTCTCCGTCGCCAGTCTCAACCATGGAATGAATCGTTACGTTTTCGTAGTCTATCGTAATGCCATCGCTGCTTTGGCCCTTGCTCCTTTTGCATTGATTTTTGAGAGGAAAATTAGGCCGAAGATAACACTCCCTGTCTTCTTGCACATAATGGCACTCGGATTTGTGGAACCAGTGATTGATCAGGGCTTCACGTTCTTGGGAATGCAATACACATCAGCTTCGTTTACCTCTGCCATAATGAATGCCGTGCCATCTGTGACTTTTGTGCTAGCAGTAATTCTAAGGTTAGAGCGTGTAAATGTTAAGGAAGTAAGGAGCCTAGCGAAGGTGATTGGGACATTGGTGACATTTTCAGGTGCTTTGCTAATGACACTTTACAAAGGTCCTGAATTTAACCTATTTCATTCTGCAAACGCAACCCACAACCAAGACGGAGCTCACTCTCCACAAGTTGTTAAACACTGGCTCTCAGGGACTCTCTTTCTTCTCCTGGGTTGTGTGGCTTGGTCATCTTTCTTCATTTTACAGTCCATAGCACTGAAAAGGTATCCAGCAGAATTGTCTCTCTCTTCTTTGGTGTGCTTATCTGGTGCCGTGCAAGCTAGTGTGGTGGCCATTATTGCCACTCGTCATTCTGGGCTTGCGGCATGGGCCTTGGGCTGGGACTTCAGACTCTACGGCCCTCTCTACACGGGAATTGTTACCTCTGGAATAACGTATTATGCGCAAGGCTTGGTGTTGCAAAGCAGGGGCCCGGTGTTTTTAACTGCCTTTAATCCTCTTTGCATGGTCATAACCTGTGCTTTAGGCTCCTTCCTTTTTGCAGAGCAACTTCACTTGGGCAGTATCATCGGAGCTGTCATTATCGCATTGGGTCTGTACTTTGTGGTGTGGGGCAAAGGCAAAGACCATTCAGACCCCACGCCATCATCTCCTACAGCAAAGCAAATGGAGACACAAAAATTGCCAATTTCTTCATCTGATATCTGA 1101 0.4623 MEQQYCRCASFGTNFSRAKPYLLTVGLQFGFAGALIFSVASLNHGMNRYVFVVYRNAIAALALAPFALIFERKIRPKITLPVFLHIMALGFVEPVIDQGFTFLGMQYTSASFTSAIMNAVPSVTFVLAVILRLERVNVKEVRSLAKVIGTLVTFSGALLMTLYKGPEFNLFHSANATHNQDGAHSPQVVKHWLSGTLFLLLGCVAWSSFFILQSIALKRYPAELSLSSLVCLSGAVQASVVAIIATRHSGLAAWALGWDFRLYGPLYTGIVTSGITYYAQGLVLQSRGPVFLTAFNPLCMVITCALGSFLFAEQLHLGSIIGAVIIALGLYFVVWGKGKDHSDPTPSSPTAKQMETQKLPISSSDI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02175 366 Pfam EamA-like transporter family 194 334 IPR000620 GO:0016020
Vimu10g02175 366 Pfam EamA-like transporter family 20 161 IPR000620 GO:0016020
Vimu10g02175 366 MobiDBLite consensus disorder prediction 342 366 - -
Vimu10g02175 366 MobiDBLite consensus disorder prediction 343 366 - -
Vimu10g02175 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 339 - -
Vimu10g02175 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 165 - -
Vimu10g02175 366 PANTHER WAT1-RELATED PROTEIN 20 345 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02175 Vimu-Chr10 31978214 31981970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02175 12 365 Nodulin-like Gene Family AT4G08300 46.348 3.16e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02175 - - gmx:100812537 635.18