Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02158 ATGGAGTCCACCGTCATGGACTGCAGTCCTTCCTCCAGTGCCGCCCCGCCCCGCCGCAGTGGTCGCCGGAAGCTGGTTCAATCGACGCTCTTCCCTCTCAAGCCACCGGAGCCCGTTGAGAAGAAGGACAAAGAGGACGAACTCGACGAGGATTACTCTGAGGTTAAGAGTAACAATAAGAGGAAGAGGTCCAAGGCAAAAGCCACTCCTCCGATCGACGAAGATTACTCTGAGGCTGAGAATAACAAGAAGAGGAAGAGGTCCAAGGCAAAAGCCACTCCTTCGAAAAAAGGTTCTTCTAAGCGTCCCACGCCAAAGAAAAAAGCAACTGCTAATGGCACTAAGGGTTTAACTTCGCAGCAGGTGTTGGCTAATTCTGATCAGGTTAAGGCACCTGTGTATGATTTGTTTCTAGAGGCAAAATTGGCTGCTGAGGAAGATTCGAGGATATATGCAGGACGTCAGGTACATCCGTTTTTTTCATTATGGAAGGATGGAAAAAAAGTTCATGGTGTGAGTGAATCAGGAAGTAATTTACCAACAAGTAAGAGTAAGCATAAAAGGACTACTTGCGGCCCTATTCATGTATTTGAAAATGTTAAGGATGATACGTCATCAGTTGACTGGAGAAACTGGACGTTTATGGAGAATATCACCTCTATGAACTATGGTCAAGAGAGTGTAAATTCATCTGTTTTAGAGAGTTCTGTTGAATCCTTAAATTTTGACAAGCTTCACAGTTTTTTGAATCCATCAGGCATTTCAATTTCTCAAAATGCCTTATCACTATCAAACCCATCTTCACTAGCAGAGCAATCAGCACGTCTGACGTGTGGAAATGCTGAACTGGACATGGAGGTGGATGAATCTGTTACTCCAACTGTGCAAGCTGGCATTTTTAGAAAGTCTAAAGATACCGAACCACTGAATAGATTTCTTCAAGAAAGTACGAGATCATACTACCGTAGCTGTTTAGATATGGAGGAGTGCAACTTGTGGACATACAAATATAAGCCAACGAAGGCTGTTGAGGTATGTGGGAATGATGAATCTGTTAATTTCTTGAGTGATTGGCTACATCGTTGGCATGAAAGGCAATATAAAAGCAGGAAGGATAATACTGACACTGATAAAAGTGGCATGCAAGATGTTGAAGATGACGATGATGATTATAAATGTTCTGATAGCGACTGTGATTCAGAAGATATGAATGAAAAGGATTCCCTGCAAAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTTCAGCAGTCCATGCTTGTGCCAAAGAGCAAGGGTTTGTTATTTTAGAGTTCAATTCATCACATTCTACAAATGGGACTGCTATCAGGAACTTGGAACATTCTCTTAATTCACTTGGGTTCAAAAGCCAATCAGGCAGCACTGCAAGTTCACATAAGATCTCTCCAAAACCGGCACAAGCTCTGGCTATGCTCAGTGGTAAAGCTGCTGATGAGGCGAATGGAGTGGATGAACTGATAACCATATCCGATGATGAGGCTCGTAGCCATAGTGGATCAACATTAAAGTTACACGGTGAAAATAATGATACTGAAAAATATAAAATCCATCGTCTAGTTCTAGTTGAGGATGTGGACATCCTTTTTGCCGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACATCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGTCTGCGACATAAGTTTGACATGCTCCATGTTCCATTCGTGTTGCCATCACCAAAGGAATTGCTTTGCCATTTGTACAGTGTTTGTCTCACTGAAGGAGTCAACATCCATCCTCTTTTACTAGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAAATCATCATGCATCTTCAATTCTGGTTTCAGAGTAAAACATTTAAAAAAGATGAAAAGGCACAAACAGGTTACGGCTCACTTCCATTTGATCTTGAGCTTGCCCATGAGATTCTTCCGAAGATGATGCCCTGGAATTTCCCCTCAGTGATTTCCGATCTAATTGAGAACAAGATAGCTAAACAAATAAATATAATGGAAGAAAACTCCAAAGGGTTGGTTACAGAAAAGCTTCACATAAGTGAACGGCAAAAAGATTTAAATGTGAATTATACGGAGACTGATGATATAGAGGCCATGAAGGCGGAGATGATTAATAGGAATGGATTGTTGACGGATTACTTTGAGCTTGAAATTCAACGTAGCACTATTTCTGAGTTTTCCAATTCATCTGGTTCCCCACTTGCATCCTCTAGGCATAATGGTCGAAGGAAACTTGTAGTCATGTCCTCAGACTCTGAGGATGACAATTCAAATTGTGGATATCCTGTAGACTCCCACGATGAAGCTAATACGAGGCAACTGATGAAAGAAAATAATGGTTGTCCATCAGAATTTCTATTAAATGGAAACTACCCGGACACATCAGTTGATAGACTAGTCTGTTCCGATTTGGAGCACTCTGAGGACGAAGATTTTAAATATTCAGAAATGGCTGATGGTGCATACTTGAATGAAACATGTAAATCACTAGAAGTATCATGTGTGCCAGAATCAACGTTTGTTCCTGAAACTGAAATTGAAAACGGAACAGAGACATTGTCTGGAGCAGTGTCTTCTGGTCCTGCTCTCCCTTTTGTTAGTCTTCCAGAAGTATCTGTAAATAATGAGTTGAAACCATTCAATTTCAATGTTCGTAGGCGCTTAACAAAATTGTCACAGAATCCAGATTTGTTGGCGGATACTGAAATTCCAGATCATTCTTTTCAAGGGGTTCTGCCTGATGTTCAAGATGAACATACGGAGACACTTGTTAAAGTGATGGATGAATGCAGTCGAATGGATTTCAAACCAAAGCCAACATTGTGGCACTCCAATCCATTAGACGAGACAGAAAAGATACAAAACGTGTGGAGAGATCTCCGTGATCGCCGAGTGGATTTAGGACAGCATTCTATCTCAGAAGAGCTTGGTGCTTTTCATGTTGTTAAACTTGCTAGTGGACTGTGCAATCTAATTTCAGATGCTGACTTGTTTCCTAAATGGGATAGCATGGAACCTTCAATGTTCCTATCTAACGAAGCTGCATCACATGATTATTGTGAACAAATGATGTCCACTGTGGCTGAGCACGGGTTTTGCTTTTACGCCAAGCTTATAGCAGATGAAGCATCAAAGTTGGGCTGTGCAAATTGTGCTGATATTACTTCTGAGATGTTGGCTTCCTCCACTGATATTATGGCATTGGGGAAATTATCCCGACAGGATCTCTCGAAAATGAAGGCTTTCCGTACTGGAAATGAAGTAGAGTGGAACACCCAAATAAATAATATGCAAAAGAGTGAAAAGAAAAGATCTCTAATCGAGGTCATCCAATCCATTGCTCCTGCAAAAACATCCTTGGCATTAAAAGGTTATGCATTCAACGAATATCTATCTTCACTACGCCAAATTTCTAGGTCTGAAGCTTTCCGTATTTCACAAGTGGTCGAAAAGAAGAGAGGAGGAAGGGTACGGGGCGTTCACCATTACTTGAGCACAAATACCAAGTTGTCTCCAGAAGAAATATCTTTGGTGACCGATGGTGATCCCTACAGAAAAGTTTCTTCCCAACATACAACATAG 3669 0.4118 MESTVMDCSPSSSAAPPRRSGRRKLVQSTLFPLKPPEPVEKKDKEDELDEDYSEVKSNNKRKRSKAKATPPIDEDYSEAENNKKRKRSKAKATPSKKGSSKRPTPKKKATANGTKGLTSQQVLANSDQVKAPVYDLFLEAKLAAEEDSRIYAGRQVHPFFSLWKDGKKVHGVSESGSNLPTSKSKHKRTTCGPIHVFENVKDDTSSVDWRNWTFMENITSMNYGQESVNSSVLESSVESLNFDKLHSFLNPSGISISQNALSLSNPSSLAEQSARLTCGNAELDMEVDESVTPTVQAGIFRKSKDTEPLNRFLQESTRSYYRSCLDMEECNLWTYKYKPTKAVEVCGNDESVNFLSDWLHRWHERQYKSRKDNTDTDKSGMQDVEDDDDDYKCSDSDCDSEDMNEKDSLQNVLLITGPIGSGKSSAVHACAKEQGFVILEFNSSHSTNGTAIRNLEHSLNSLGFKSQSGSTASSHKISPKPAQALAMLSGKAADEANGVDELITISDDEARSHSGSTLKLHGENNDTEKYKIHRLVLVEDVDILFAEDRGCIAAIQQIAETSKGPIILTSNSDNPGLRHKFDMLHVPFVLPSPKELLCHLYSVCLTEGVNIHPLLLEKFIHSCDGDIRKIIMHLQFWFQSKTFKKDEKAQTGYGSLPFDLELAHEILPKMMPWNFPSVISDLIENKIAKQINIMEENSKGLVTEKLHISERQKDLNVNYTETDDIEAMKAEMINRNGLLTDYFELEIQRSTISEFSNSSGSPLASSRHNGRRKLVVMSSDSEDDNSNCGYPVDSHDEANTRQLMKENNGCPSEFLLNGNYPDTSVDRLVCSDLEHSEDEDFKYSEMADGAYLNETCKSLEVSCVPESTFVPETEIENGTETLSGAVSSGPALPFVSLPEVSVNNELKPFNFNVRRRLTKLSQNPDLLADTEIPDHSFQGVLPDVQDEHTETLVKVMDECSRMDFKPKPTLWHSNPLDETEKIQNVWRDLRDRRVDLGQHSISEELGAFHVVKLASGLCNLISDADLFPKWDSMEPSMFLSNEAASHDYCEQMMSTVAEHGFCFYAKLIADEASKLGCANCADITSEMLASSTDIMALGKLSRQDLSKMKAFRTGNEVEWNTQINNMQKSEKKRSLIEVIQSIAPAKTSLALKGYAFNEYLSSLRQISRSEAFRISQVVEKKRGGRVRGVHHYLSTNTKLSPEEISLVTDGDPYRKVSSQHTT 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 36 59 - -
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 369 404 - -
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 105 119 - -
Vimu10g02158 1222 Gene3D - 331 584 IPR027417 -
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 381 396 - -
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 66 85 - -
Vimu10g02158 1222 Gene3D - 591 653 - -
Vimu10g02158 1222 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 11 1219 IPR004582 GO:0006281
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 86 104 - -
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 1 16 - -
Vimu10g02158 1222 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 593 654 - -
Vimu10g02158 1222 MobiDBLite consensus disorder prediction 1 119 - -
Vimu10g02158 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 668 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02158 Vimu-Chr10 31768729 31778182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02158 333 636 Core DNA Replication Machinery Family AT5G22010 22.876 1.05e-08 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02158 K26118 - gmx:100784209 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02158 10 31768729 31778182 Vimu10g02158 10 31768729 31778182 ECH