Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02150 ATGGACTACGGAAGACTTGGACCCTCCCAGCCCATCAATCCAAGATCTTCCGCTAAGAAGAAGATTGCCTTGCTGTCACTCTTTGGAGTCATATTAATCGCTGCATCGGCGGTTACGGCCTTTGCGCTACACTCTCGAACCGCTACAAGAGCGGATAGTTCAAGGCTTCGGCGAAAGCCTACACAGGCCATTTCACGCACGTGCAGCAAAACACGATTTCAGACAGTGTGCGTCAATTCGCTGCTGGACTTTCCCGGATCCCAGGCGGCTTCCGAGAAGGACCTGCTTCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAAAGCGCTCTACACTTCCGCCGCAATTTCCTACTCCACCATGGATCCACGCGTCCGCGCCGCTTACGACGACTGCCTCGAACTCCTCGACGATTCCGTCGACGCGCTTTCGCGCTCCCTCAGCACCGTCTCCCTCGGTGCCGTTGGCTCCGCCAACGAAGACGTCCTCACCTGGCTCAGCGCCGCGCTCACCAACCAGGACACCTGCGCGGAGGGCTTTGCCGACGCCGCCGGTCCAGTGAAGGACCAGATGAGCAACAACCTCAAGGACTTGTCCGAGCTCGTCAGCAATTGCCTCGCCATTTTCTCGGCAGCGGCCAACGGCGACGACTTCTCCGGCGTTCCCATTCAGAACAGGAGACGGTTGATGACAATGCGAGCCGATAATTTCCCGAGATGGTTGAATCGACGAGATAGGAGATTGCTGAACCTGCCTCTGTCGGCTATACAAGCCGATGTTGTGGTTTCCAAGGACGGTAACGGAACCGTTAAGACCATCGCCGAAGCCATTAAGAAGGTCCCGGAATACAGTTCACGCCGCTTCATTATCTACGTCAGGGCAGGAAGGTACGAAGAGGAGAATTTAAAGGTGGGGAGGAAGAAAACAAATGTGATGTTCGTAGGGGACGCTGCTAGTGGTTCTGGGTTCATCGCCAAGGACATCACATTCGAGAACTACGCCGGACCAGAGAAGCACCAAGCTGTGGCTCTCCGTATCGGAGCGGATCACGCGGTGGTGTACCGCTGCAACGTCATCGGATACCAGGACACAATGTATGTCCATTCCAACCGTCAATTTTTCCGCGAATGCGACATTTACGGAACCGTCGACTTCATATTCGGCAATGCTGCCGTCGTGTTTCAGAACTGCAGTCTCTGGGCCCGCAAGCCAATGGCCCAACAGAAGAACACCATCACGGCCCAGAATCGCAAAGACCCGAATCAGAACACGGGCATTTCCATCCACAACTGTCGGATCCTTGCCACATCGGATCTAGAAGCATCCAAGGGTAGCTATTCCACTTATCTAGGTCGTCCATGGAAACTTTATGCTAGAACCGTCTACATGATGTCCTACATAGGGGATCACGTGCACCCACGTGGATGGCTGGAGTGGAACACTTCCTCGTTTGCTTTAGACACGTTATACTATGGTGAATACATGAATTCTGGGCCGGGTGCGGCCTTGGGGCAACGCGTGAAATGGGTCGGATATCGGGCCATCAATTCCTCCGCTGAAGCTTCTAAATTCACGGTAGGGCAATTCATATTAGGGTCATCCTGGTTGCCGTCTACCGGAGTTTCATTCGTAGCTGGGTTATCAACTTGA 1653 0.5402 MDYGRLGPSQPINPRSSAKKKIALLSLFGVILIAASAVTAFALHSRTATRADSSRLRRKPTQAISRTCSKTRFQTVCVNSLLDFPGSQAASEKDLLHISFNVTLQHFSKALYTSAAISYSTMDPRVRAAYDDCLELLDDSVDALSRSLSTVSLGAVGSANEDVLTWLSAALTNQDTCAEGFADAAGPVKDQMSNNLKDLSELVSNCLAIFSAAANGDDFSGVPIQNRRRLMTMRADNFPRWLNRRDRRLLNLPLSAIQADVVVSKDGNGTVKTIAEAIKKVPEYSSRRFIIYVRAGRYEEENLKVGRKKTNVMFVGDAASGSGFIAKDITFENYAGPEKHQAVALRIGADHAVVYRCNVIGYQDTMYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSLWARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILATSDLEASKGSYSTYLGRPWKLYARTVYMMSYIGDHVHPRGWLEWNTSSFALDTLYYGEYMNSGPGAALGQRVKWVGYRAINSSAEASKFTVGQFILGSSWLPSTGVSFVAGLST 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02150 550 NCBIfam pectinesterase inhibitor domain 42 211 IPR006501 GO:0004857
Vimu10g02150 550 Gene3D - 254 548 IPR012334 -
Vimu10g02150 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 213 IPR035513 -
Vimu10g02150 550 SUPERFAMILY Pectin lyase-like 255 547 IPR011050 -
Vimu10g02150 550 PANTHER PECTINESTERASE 35 538 - -
Vimu10g02150 550 FunFam Pectinesterase 60 213 - -
Vimu10g02150 550 FunFam Pectinesterase 317 548 - -
Vimu10g02150 550 SMART PMEI_2 59 209 IPR006501 GO:0004857
Vimu10g02150 550 CDD PMEI-like_3 68 215 - -
Vimu10g02150 550 Pfam Pectinesterase 318 533 IPR000070 GO:0030599|GO:0042545
Vimu10g02150 550 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Vimu10g02150 550 Pfam Plant invertase/pectin methylesterase inhibitor 63 209 IPR006501 GO:0004857
Vimu10g02150 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 211 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02150 Vimu-Chr10 31559191 31563160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02150 1 549 Carbohydrate Esterase AT5G53370 62.712 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02150 - - gmx:100808236 917.531