Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02141 GGGGAAAGGGGTTTTTCTGAGTTGATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTTGGATGGCATGGATGAGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGGTCCACCGCCCTTGCTCCGGCAACCAGCGTCCATGAGTTGCTCGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATCCACCAGTGTCACAATGGCCACACACTCTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCATTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTATAGACCATATACTTGCCCTTATGCTGGATCAGAGTGTTCTGTCGTGGGAGATATTCCCTTCCTTGTTGCTCATTTAAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTCGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTTCTTCGTTTTATGGGTGATGAGAATGATGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGAAAACTCATCTGGGAGGGTACGCCACGGAGTGTTCGAGATAGCCACCGTAAAGTGAGGGATAGCCATGATGGGCTCATCATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCTGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 999 0.4595 GERGFSELMDLESVECVSSLDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYTCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02141 332 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Vimu10g02141 332 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Vimu10g02141 332 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515
Vimu10g02141 332 CDD RING-HC_SIAHs 68 106 - -
Vimu10g02141 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 176 IPR013083 -
Vimu10g02141 332 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu10g02141 332 SUPERFAMILY RING/U-box 61 109 - -
Vimu10g02141 332 CDD Sina 184 312 - -
Vimu10g02141 332 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Vimu10g02141 332 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 317 - -
Vimu10g02141 332 MobiDBLite consensus disorder prediction 31 52 - -
Vimu10g02141 332 SUPERFAMILY TRAF domain-like 123 315 - -
Vimu10g02141 332 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Vimu10g02141 332 FunFam E3 ubiquitin-protein ligase SINAT3 19 121 - -
Vimu10g02141 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02141 Vimu-Chr10 31430298 31433710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02141 38 318 C3H Transcription Factor Family AT2G41980 75.089 8.80e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02141 K04506 - gmx:100810573 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02141 10 31430298 31433710 Vimu10g02141 10 31430298 31433710 ECH