Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02135 ATGGGGAAGAAAGGAGGCAGCTGGTTTTCCTCCGTCAAAAAAGTTTTCAAATCCTCTTCTAATAAGGACTCGCCGGTGCCGGAGAAGAAGAAAGACAACAAGAAGGAAGAGCAATGGCAGCTGCATGAGGCCCCAGAGGAGGTGTCCTTGGAGCATTTTCCTGCTGAGAGTTCTCCTGATATTACCAATGAAGGGAGTGCCACGTCAACACCACTGACTGAAGATAGAAGCCATGCTATGGCCTTTGCAGCAGCAACTGCTGCCGCTGCCGAAGCCGCAGTAGCAGCTGCTCAAGCGGCCGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCATTCCACGGAAGAAAGAGCTGCAATACTCATTCAATCATACTACAGAGGTTACCTAGCTCGACGTGCTTTGCGGGCTTTGAAGGGATTGGTGAGACTGCAAGCGCTTGTGAGAGGACACAATGTGAGAAAGCAAGCGCAGATGACGATGCGATGCATGCATGCATTAGTCCGGGTACAGGCAAGAGTAAGAGCTCGAAGACTCCAGCTGAGTCAAGAGAAGTTTCAGAGAAGAGTTGAGGAACAGGTCCAAAGAGGACTAGAGGAACAACAACAACCTAAGCTACTTTTGAGCCCCATCAAAATGTTAGACATGGATACATGGGACAATAGGCGCCAAAGTAGCCAACAGATTAAGGAGAATAATTTGAGGAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCTTACGCTTTCAACTGTCAGCAGCAGAAGCAAAATCCAAATGATGATGATGTTGGAAGCTATAGCAATGAGCGTGAAAGAGCCGAAATGGATTGGAACTGGTTGGAACGCTGGATGTTATCACAATCACAGAACTCAAGGCACTTTGGGTCACGGGAGAACCTTTATAGAACTCTTGCTACTGCAACTTCCACAACTGATGACATGTCTGAAGAAAAAACAGTTGAAATTGACATGGCTGCAACTCTGGATTCAGCTCATGCTAACATGGGTCTCATCCACCCAGAATCTTTTGACACAAGCCCAATATCCAATAGGTACCACCAGCGCCACCACAGTGCAGGTGTACCAAGCTACATGGCCCCAACTCAGTCTGCAAAGGCCAAGGCTCGTAACCAAGGCCTGTTTAAGAATAGGGGTTCACCTGGGCCTAACTGGAACTCGTCCACGAGGAGAAGTTCCATTCTAGGGCTGGGCTGTGACTCAACTAGCTCTGGTGGGCCCACTGCACCTCATGGCCCGGATAATGTTCACATTGAGGATTGGGCCCTTCCCCTTGGAACCAGTGGTTGGACTTGA 1320 0.4902 MGKKGGSWFSSVKKVFKSSSNKDSPVPEKKKDNKKEEQWQLHEAPEEVSLEHFPAESSPDITNEGSATSTPLTEDRSHAMAFAAATAAAAEAAVAAAQAAARVVRLAGYGRHSTEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQARVRARRLQLSQEKFQRRVEEQVQRGLEEQQQPKLLLSPIKMLDMDTWDNRRQSSQQIKENNLRKHEAAMKRERALAYAFNCQQQKQNPNDDDVGSYSNERERAEMDWNWLERWMLSQSQNSRHFGSRENLYRTLATATSTTDDMSEEKTVEIDMAATLDSAHANMGLIHPESFDTSPISNRYHQRHHSAGVPSYMAPTQSAKAKARNQGLFKNRGSPGPNWNSSTRRSSILGLGCDSTSSGGPTAPHGPDNVHIEDWALPLGTSGWT 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02135 439 MobiDBLite consensus disorder prediction 15 72 - -
Vimu10g02135 439 Gene3D - 115 166 - -
Vimu10g02135 439 MobiDBLite consensus disorder prediction 385 417 - -
Vimu10g02135 439 SMART iq_5 114 136 IPR000048 GO:0005515
Vimu10g02135 439 SMART iq_5 137 158 IPR000048 GO:0005515
Vimu10g02135 439 MobiDBLite consensus disorder prediction 382 439 - -
Vimu10g02135 439 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vimu10g02135 439 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Vimu10g02135 439 MobiDBLite consensus disorder prediction 23 50 - -
Vimu10g02135 439 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vimu10g02135 439 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Vimu10g02135 439 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Vimu10g02135 439 Pfam Protein of unknown function (DUF4005) 348 402 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02135 Vimu-Chr10 31366811 31370197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02135 1 402 IQD Protein Family AT3G49260 50.824 2.52e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02135 - - gmx:100808965 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02135 10 31366811 31370197 Vimu10g02135 10 31366811 31370197 ECH