Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02120 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAGCTCCCCTCTTGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACGCCGCAGCGTAGGGTCGGAGACCCGGGTCCTAAAACCCGTGAACTCGGCGCCTTCATCGACGAGAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCCAGAACCCCGACTTCCGCCGCTACGCCGAGTGCTCCTCCCGCCAAGACCCTCGCAATTGGACCGTCAACGGCACCGCCGCCACTCCCAGCGAGGACGACGAATCCGACGACGACGACGAAGATGACGACGATGAGGACGACGACGAAGGCGATACCGAAGTTGAAGGACTCGTCGGTGGTGGAAGCAAAAGGGAAATTATCGCTAACAACAACGGTGGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACGCTTTTGTTTCTGGGAGAGACCTGTTGGGGAAGGATGGTGGAGAGATTGGGCAGTTGGTGCTTAGCAATGTGAATGGTGGTGCCGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTTACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGCTGATGGGGCTTCTGGCCACAAAGTTATGGTGGATGATGGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCAATGTATTCTACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCTGTTACTCGAGCTCTTATGGATGACGCAATGATATTACCGTGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACAACCGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGAGAAGAGGAGTCTCAATTCTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGATTTGGAGACTCATCTGTTATGGAACCATCAAGGAATAGAGGTGTTCAGTTTCCGTATGCTGTTATGGACCGGGTTGTCATAAAGGGAAACAAAAGGATACCACAACGCTTTGTTGGGCGTGAAGCGATTGTAACAACGCAATGCCTGAATGGATGGTATGTAGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCACTCGCTAAGGTTTTGGATGATCCTTCAAAGCCTTCCTCCAGCAAGATGTCACCTAATTGGCTTTAG 1284 0.5062 MSSEDITLVPDQRIENGLSSPLVFQDDPLRFNCPTPQRRVGDPGPKTRELGAFIDEKMFIDRDRFFAAQNPDFRRYAECSSRQDPRNWTVNGTAATPSEDDESDDDDEDDDDEDDDEGDTEVEGLVGGGSKREIIANNNGGGGNLPSVANGKAHAFVSGRDLLGKDGGEIGQLVLSNVNGGADEDHRQEGLGKSQNSVTVAETDCEEYYSHYLQGADGASGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTRALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDSSVMEPSRNRGVQFPYAVMDRVVIKGNKRIPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPSSSKMSPNWL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02120 427 MobiDBLite consensus disorder prediction 98 122 - -
Vimu10g02120 427 MobiDBLite consensus disorder prediction 78 143 - -
Vimu10g02120 427 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Vimu10g02120 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 422 - -
Vimu10g02120 427 SUPERFAMILY RING/U-box 248 320 - -
Vimu10g02120 427 MobiDBLite consensus disorder prediction 324 343 - -
Vimu10g02120 427 MobiDBLite consensus disorder prediction 82 97 - -
Vimu10g02120 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 318 IPR013083 -
Vimu10g02120 427 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02120 Vimu-Chr10 31217113 31221460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02120 19 427 Plant U-box Gene Family AT5G05230 44.471 2.73e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02120 - - gmx:100786717 684.871