Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02118 ATGGAATTTGCTTCCGAACATGATTTCCCCAATTTTGATATCATTCCTCATACCTTCGCCTCATGCTTTTTCTCTGCTCAACTATACCCCACAGACAATATTATTCCTATGGAACAGTTTCTCGTGACTTTCGAGTGGTATTTTAATGGTGTATGTGACTTCAGAACGATGGAGGTTTCGCTTTCACCATTAGAGGGTTTTTCCGGTCACGATTGGACACAGCAGTTGCCGTATTCAAGTAAGCAACTTTGCTTGAATGAGTTTCCAGATTTGGAAAACCTGGACCTCGATTTTAGCCTCCCACCGCTGGGTGAAGATTTGGAGGAGGTGGACCAGAAGCCCTTGAACATTGTTGTTGTTCCCGAAGAGGGTCATTGCGGTCGGGAGAAGGGTTTTGGGGATGCTTTATTGGCGATTGAAAATGGGTCTGCGATTTGTGTGAAGAAAGAGGAGGTGCAGAATATCGAGCAGATGGCAGTGCCTAGTGGTAGTAGTGGCAGTAAGAAGAAGAAGCCATATGCTTTGGAATTTGAGGAGATAAAGAAGCATTTTGATGTTCCCATTAATGAAGCTGCGAAGCAAATGAATGTGGGGCTAACCATGTTGAAGAGAAGGTGCAGGGAGCTTAACATCATGAGGTGGCCCCATAGGAAACTCAAGAGCTTGCAATTACTCATCGAGAATGTTAAGGAATTGGGTTTGGCAGACGAGGTTCCCATGTTGGAGAAGCATAAAAGGTTGTTGGAAAAATTACCTGGACTGGAATTATGTGCAAAAGCCAAGAAGCTGAGGCAAGCTTGTTTCAAAGCTAATTACAAGAGGAGAAGGTTTATGGGTATGCCAGGAATTCGTGGATGA 858 0.4417 MEFASEHDFPNFDIIPHTFASCFFSAQLYPTDNIIPMEQFLVTFEWYFNGVCDFRTMEVSLSPLEGFSGHDWTQQLPYSSKQLCLNEFPDLENLDLDFSLPPLGEDLEEVDQKPLNIVVVPEEGHCGREKGFGDALLAIENGSAICVKKEEVQNIEQMAVPSGSSGSKKKKPYALEFEEIKKHFDVPINEAAKQMNVGLTMLKRRCRELNIMRWPHRKLKSLQLLIENVKELGLADEVPMLEKHKRLLEKLPGLELCAKAKKLRQACFKANYKRRRFMGMPGIRG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02118 285 ProSiteProfiles RWP-RK domain profile. 158 244 IPR003035 -
Vimu10g02118 285 PANTHER PROTEIN RKD4 171 282 IPR044607 GO:0003700
Vimu10g02118 285 Pfam RWP-RK domain 175 222 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02118 Vimu-Chr10 31168334 31169874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02118 175 279 AtRKD Transcription Factor Family AT5G53040 62.857 2.07e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu10g02118 RWP-RK 7.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02118 - - pvu:PHAVU_009G051600g 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02118 10 31168334 31169874 Vimu10g02118 10 31168334 31169874 ECH