Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02104 ATGGGTAGCTTCAGCGAAGACGATGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTTTGTCTATAGCGGATGATGAAGGGGTATCTAATGCTTTCGATTATGGATTGTGGATTCGGAGTCCAAGGAGTGTTAGAGAGCGTAAGGGCAGGTTTATGAAGAGTATGGGACTGAGTAGCGTGGATTTGACTGTCCTAGAAAGTGAAAATTCAGTAGATGTGGGTAGTGTTCTGTGGGAAGAGGGAAAGGATAGAGTTGAATTTACTAGTGGGGCTGTGACCCGAAATTGTGTTGTGGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTTGCATAGGGAGGATTCTTCAGAGGAGCTTGGTTTAGTGGATAACTCGCCGTGTGGAAATGAGAATTTGGAGGGTAATGTGGATCAAGAGGGGCTGGAGAGTAGGGACATGAGTGATGAAAGAGATCTGGATTCAGATCGATTGGTTGTTACGGCAGAGCGTAAGGACTCAGAGAATGGCTTTAGGGAAACGGATGCCAATGCTTCTGCTCGGAGGACAAAAGGTTGGTTCAGGAAATTGCGGTCAATATCATGCATGGTTAATAGTCATGGGGAAGGTGATTTTGGAAGAGGAGAAGGCCTTGATGAAATGCGAGGGTGTAGGCTACCGAAAGTTAAGGTCCGTCAGTCAAAGAAGCCAATGAAGGAACTTTCAGCTCTTTACATGAGTCAAGATATCAAAGCTCACGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCAAGTGGTGGTGAAGATGGAGTTGTGCGCTTGTGGCAAGTGGTCGAGGAGGATAGATGTAATGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTCACTGTGAATAATCTCTCTGAATTGACACCATTATTTATTGATAAAGAAAAGATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCTGCTTGTGTAGTTTTTCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCATTGCATGAATTTCGTGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATAATGACCGTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACCTGCATACAATTTAATCCTGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTTCTGATTGTCACGTTGTTGATTGGATTAGTATCAAAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGATTTTACAATGTATCAGAGAATCGCTTGCAGTTAGATTCCCAACTATGCTTAATTGGTAAAAAGAAGCTTCTTGGCAGAGGGATTACTGGGTTTCGGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGCCTTAATGTGATTGGCAAGTATAAAAGCCTTAGCACAGGGAGCCCAATATGTGCATCGTTTACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCTAACGTATACCTATGGAATGTTAATGAGGAAGAGTCATCTAATCCTGTGAAAGCTAAGAAGATTACGTCTTGTGAGCGGTTTTGCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAAAAATATTGAAAATAAACATCAGTTGAACTTGTTGGATAAAGGATCATCTCAAGTTATTCAACTTAATCCACCTGCTTCCTTCTCTCTGAGCCAAGAGTTTGTTTTGGAGTCTTTTTCGAAGGGGTCTGCAACTTGGCCAGAGGAGAAGCTTCCTGTTTCAAGCTCAAAGGCGAAAACATCATTGATTCACCAATCCGAATACAATTTCTTGAAGTCTTCTTGCAAGAGTACTTCATCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGCAGGATAAAAGCATTCCACAATTATGGGCTACCCATACCCCTTGGAGATTTTATAAACGATGTTAAATTTGGCAGTATCAAGGTTGAGGTAAAAACCTTTAGCAGTAATTGTAGTTCCAATGAGGTGCCCTATAAGATTTCAGAGGATTCATATTGCTCATTGGTTCATGACAAGCTGTGGCACTATTGTGGTTGTAATGGCCAAGTTTTAGCTTGTCCTGGCACCCAGGGTAAATTGCATTTTGCGACCAAGAATCTGCTGACCCCTAAAAGAGATGCAAAGTCATGTGAGGAGATTGAAGAGGTAGTGGCTCAAGCTCTCACTATGATAAAAATGCTGCTGGGTTGGCCTCATGTGCCTGAGGATGATACTTTCAAGTGTGGTGAGAATATGTGTGGCGGTCATTTCTGTTCGAATAGCTGCTTTTGGCTGCCTTCTTCGGCAACTGATGCACTTCTCATTATTATTATTATTATTGTTATTATTATTAACAGACGTTCTTAA 2559 0.4181 MGSFSEDDECRFFDAQEDVLSIADDEGVSNAFDYGLWIRSPRSVRERKGRFMKSMGLSSVDLTVLESENSVDVGSVLWEEGKDRVEFTSGAVTRNCVVEEEFCSSRTSMSCLHREDSSEELGLVDNSPCGNENLEGNVDQEGLESRDMSDERDLDSDRLVVTAERKDSENGFRETDANASARRTKGWFRKLRSISCMVNSHGEGDFGRGEGLDEMRGCRLPKVKVRQSKKPMKELSALYMSQDIKAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACVVFPPKIFRLLEKPLHEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNNDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAISDCHVVDWISIKDIVTAVCYRPDGQGGIIGSLAGNCRFYNVSENRLQLDSQLCLIGKKKLLGRGITGFRFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPICASFTSDGKHILSACEDSNVYLWNVNEEESSNPVKAKKITSCERFCSNASVAVPWHGLKSKNIENKHQLNLLDKGSSQVIQLNPPASFSLSQEFVLESFSKGSATWPEEKLPVSSSKAKTSLIHQSEYNFLKSSCKSTSSAHAWGMVIVTAGWDGRIKAFHNYGLPIPLGDFINDVKFGSIKVEVKTFSSNCSSNEVPYKISEDSYCSLVHDKLWHYCGCNGQVLACPGTQGKLHFATKNLLTPKRDAKSCEEIEEVVAQALTMIKMLLGWPHVPEDDTFKCGENMCGGHFCSNSCFWLPSSATDALLIIIIIIVIIINRRS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 382 - -
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 420 - -
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 563 IPR001680 GO:0005515
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 277 - -
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 277 IPR001680 GO:0005515
Vimu10g02104 852 MobiDBLite consensus disorder prediction 139 154 - -
Vimu10g02104 852 SMART WD40_4 237 276 IPR001680 GO:0005515
Vimu10g02104 852 SMART WD40_4 341 379 IPR001680 GO:0005515
Vimu10g02104 852 SMART WD40_4 645 691 IPR001680 GO:0005515
Vimu10g02104 852 SMART WD40_4 473 513 IPR001680 GO:0005515
Vimu10g02104 852 SMART WD40_4 423 462 IPR001680 GO:0005515
Vimu10g02104 852 SMART WD40_4 382 421 IPR001680 GO:0005515
Vimu10g02104 852 SMART WD40_4 514 554 IPR001680 GO:0005515
Vimu10g02104 852 Pfam WD domain, G-beta repeat 244 275 IPR001680 GO:0005515
Vimu10g02104 852 Pfam WD domain, G-beta repeat 528 554 IPR001680 GO:0005515
Vimu10g02104 852 Pfam WD domain, G-beta repeat 343 378 IPR001680 GO:0005515
Vimu10g02104 852 Pfam WD domain, G-beta repeat 384 420 IPR001680 GO:0005515
Vimu10g02104 852 SUPERFAMILY WD40 repeat-like 240 689 IPR036322 GO:0005515
Vimu10g02104 852 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 388 IPR001680 GO:0005515
Vimu10g02104 852 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Vimu10g02104 852 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Vimu10g02104 852 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vimu10g02104 852 MobiDBLite consensus disorder prediction 122 154 - -
Vimu10g02104 852 Gene3D - 227 588 IPR015943 GO:0005515
Vimu10g02104 852 PANTHER WD REPEAT DOMAIN 44 5 696 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02104 Vimu-Chr10 30904495 30908310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02104 244 448 U-box Gene Family AT2G33340 25.322 2.05e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02104 - - gmx:100807177 1158.28