Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02095 ATGGAAAACGAATTATTAACTCGTGCCTCACTTGCCCCAACATCGGAGTTACTTTCTCGGACCATACATGCTGTATTTGACACTGTGAAAGCAGCGAATGAGGTTGTCATTCACAAGGAAAATTTTAAGAGATTCGCTATTCATTTGGAGAATGTTTCATTTATATTAAAGTCTTTGTCGAAGGAAGGCATACACAACGGCTGGAGCTTGCAAAAGGCTGTGGCTGGTCTCAACCGAGAGGTTGAAGTTGCTAAGCAGCTTTCTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTTTAATCAATTCAAGAAAGATTGTTACCCGCTTGAATTGTTGTACCAAGGATATAGGTCGTGCCATAACTCTTATACCTTTGGCCTCTTTAAACATTAGCTCTGGTTTAAATCAACAGATAAGTGAATTGTGTCAGAAAATGTTAGATGCTGAGTATCAAACAGCTGCAACAGATGAGGAGATTTTGAAGAAAGTTGAGACAGCAATACAAGAGGGAAATGTTGATCGGTCCTATGCGACTCAGTTGCTAGCTGGCACTGCACGTGCCATTGGGGTCCCCGTGGAGCATGGTGCTTTGAAAAGAGAATTCGAAGATCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGATGGACATGTCAGAAGCTCTACACATGGAGCAGATTATTGCAGTGCTTGGAAAGGCAGATTTTATAACTTCAGCACAAGAGAAGGAAAGTAAGTATTTTGAGAAGAGAAATTCCTTGGGAGAGAGACCATTGAGAGCTCTGCATTCCTTTTACTGCCCAATCTCTCATGAAATCATGGTGGACCCCGTGGAGACTTCCTCTGGGAAGACATTTGAGAGAAGTGAAATAGAGAAATGGTTTGCTGAAGGGAACAATCTCTGTCCCTTGACCAGGTTGCCTCTGGATACTAGAATCCTGAGGCCAAATAAAACTCTTAAAATGTCTATTCAAGAATGGAAGGATAGAAACACTATGATTACCATTTCTACCATCAAATCCGAACTTGAAACGAATGACGAAGAGGAATTGATTCGGTCCTTAGACAAATTACAGGACTTGTGCTTAGAAAGAGAGGTGCACCGGGAATGGTTACAAATTGAGAATTACATTACTGTTCTCATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTACTCATCCTGTCTATGCTTGTAATGGATAATGCGGAGAACAAGGAAGATATTGCTATAGTGGATAATGGACTGGGATTGATTGTTCGCTCACTTTCACGACAAGTTGAGGAGCGCAAGTTGGCATTGGAGTTGCTGTTGGAGCTATCTAAAAGTAAAACGTTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTGCTGGTAACAATGTTAAATAGTGATGATGTCGAAGCAGCCAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTTTCTACAGGACCAGAAAATGTGAAAAGAGTCATGGCTGAAACTTTGTCAGAAATTACATTAATAGACCAGAATAAATTGTCTTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATGATGATTTGGAAATCAAGAAGGTGTCTGTCAAAGCTTTACTACAGCTCTCAAGCATGCCAGAGAATTGCCTGCAGATGATTAAGGAAGGTGTTGCTCAACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTGCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCGATGTCAACAACTCACCAACAAGCTGAAGCAGAACAGCTTTCATTCTTAGATTCCGATGAAGACGTGTACAAATTCTTCTCTCTAATTTCTTTGACTGACCATGAGATACAAAACAAGATTCTCAAAGCTTTGCAGGCGCTGAGCCAATCTTTCTATGGCTTCCGCATCAGAAAGAGGTTGAGACAGATATCGGCCGCTAAGTTATTGGTAAACTTATTGGAGACTAATACTCAAAAAGTTCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACAGAAGACGATGATTATGGCAACATCTCACCACATATAACTGAAAGATTCATTGAAGTCTTGCTTGCCATCATTGAGGTTTCTGATGACGCAGAGGAGATGATTACTGTAATGGGTATCATCTCTAAACTTCCGCAGGAGTCTCAAATGACGCAATGGCTTCTAGATTCTGGGGCACTTAAAACTATTTTGACTTGTCTTACTGATCAACATAGCCATGCCTCAGACAAAATCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCGTCGAATCTGGAGTGGCAGAAGAGTGTGGCTTTAGAAGGCATAATCCCAGTACTGGTGCAACAGCTGCTTTCTGGAACACCCTTTACAAAACGAAATGCAGCCATTTCGATCAAACAGTTTTCGGAAAGTTCCTATCGCTTGAGCGAGCGGATAAAGAAGCCAGGTATTCTCAAATGCTGCTTTGTAGCCCGAGAAACTGGTTGCCCAGCACATTTAGGCACCTGCTCAATCGAGAATTCATTCTGCATTCTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCTTGCTTGGTGACACGGATGTTAGAACCTGCGAAGCTTCCTTAGATGCGATACTAACTTTGGTTGATAGTGAAGCACCGCAGAGTGGAAGTAAGGTACTTTCAAATTCAAATGCCATTGCACCGATGTTACAATTGTTGAGTGTTGAAGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTAGATGAAGTGAGAAATAAGTACAAAGCTATGGCTACAATGGCCTTGGTAGGCATAACTCAAGGGAAAGATAGCCGTTTGAAAAGTCTTGCTGGTAGAGGCCTTGCTCAATTGGGTATACTTGATAAACAGTCTTCTTATTTTTAG 3018 0.4132 MENELLTRASLAPTSELLSRTIHAVFDTVKAANEVVIHKENFKRFAIHLENVSFILKSLSKEGIHNGWSLQKAVAGLNREVEVAKQLSVECNSRSKVYLLINSRKIVTRLNCCTKDIGRAITLIPLASLNISSGLNQQISELCQKMLDAEYQTAATDEEILKKVETAIQEGNVDRSYATQLLAGTARAIGVPVEHGALKREFEDLKNEMENAKSRMDMSEALHMEQIIAVLGKADFITSAQEKESKYFEKRNSLGERPLRALHSFYCPISHEIMVDPVETSSGKTFERSEIEKWFAEGNNLCPLTRLPLDTRILRPNKTLKMSIQEWKDRNTMITISTIKSELETNDEEELIRSLDKLQDLCLEREVHREWLQIENYITVLIGLLSSKNREIRKRVLLILSMLVMDNAENKEDIAIVDNGLGLIVRSLSRQVEERKLALELLLELSKSKTLCSLIGNIQGSILLLVTMLNSDDVEAAKNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENVKRVMAETLSEITLIDQNKLSLVKDGALQPLLQLLLNDDLEIKKVSVKALLQLSSMPENCLQMIKEGVAQPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTHQQAEAEQLSFLDSDEDVYKFFSLISLTDHEIQNKILKALQALSQSFYGFRIRKRLRQISAAKLLVNLLETNTQKVRVNALKLFYCLTEDDDYGNISPHITERFIEVLLAIIEVSDDAEEMITVMGIISKLPQESQMTQWLLDSGALKTILTCLTDQHSHASDKIIENSVQALCRFTVSSNLEWQKSVALEGIIPVLVQQLLSGTPFTKRNAAISIKQFSESSYRLSERIKKPGILKCCFVARETGCPAHLGTCSIENSFCILQANALEPLVRLLGDTDVRTCEASLDAILTLVDSEAPQSGSKVLSNSNAIAPMLQLLSVEAPRLQEKILIALERIFQLDEVRNKYKAMATMALVGITQGKDSRLKSLAGRGLAQLGILDKQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02095 1005 SUPERFAMILY ARM repeat 533 855 IPR016024 -
Vimu10g02095 1005 Gene3D - 333 533 IPR011989 -
Vimu10g02095 1005 SUPERFAMILY RING/U-box 251 333 - -
Vimu10g02095 1005 Gene3D - 863 988 IPR011989 -
Vimu10g02095 1005 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Vimu10g02095 1005 Coils Coil 195 222 - -
Vimu10g02095 1005 Gene3D - 636 860 IPR011989 -
Vimu10g02095 1005 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vimu10g02095 1005 SUPERFAMILY ARM repeat 335 624 IPR016024 -
Vimu10g02095 1005 CDD RING-Ubox_PUB 265 314 IPR045210 -
Vimu10g02095 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Vimu10g02095 1005 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Vimu10g02095 1005 Pfam MCAfunc domain 29 153 IPR045766 -
Vimu10g02095 1005 Gene3D - 534 635 IPR011989 -
Vimu10g02095 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1005 - -
Vimu10g02095 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 332 IPR013083 -
Vimu10g02095 1005 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vimu10g02095 1005 SUPERFAMILY ARM repeat 872 997 IPR016024 -
Vimu10g02095 1005 SMART arm_5 572 615 IPR000225 GO:0005515
Vimu10g02095 1005 SMART arm_5 752 796 IPR000225 GO:0005515
Vimu10g02095 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Vimu10g02095 1005 SMART arm_5 531 571 IPR000225 GO:0005515
Vimu10g02095 1005 SMART arm_5 490 530 IPR000225 GO:0005515
Vimu10g02095 1005 SMART arm_5 872 913 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02095 Vimu-Chr10 30701085 30705630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02095 264 1005 U-box Gene Family AT1G20780 27.883 5.85e-56 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02095 - - gmx:100818273 1574.68