Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02082 ATGGGAGGTTCATCGGAGACTAAGTTCTTGCAAGACCTGTTGTTGTATGCTGCGAGCGCGGCGTTGAGTTGCTTGGTGTTGTTCGCGGGACTCAGACACCTCGATCCTAATCGCGAAGCTTCCAAAAAGGTTCTTGAGCACAAGAAAGAGATTGCAAAGCGTCTCGGTCGCCCCCTTATTCAGACTAACCCTTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTAATTCTATTGGGGGACTGGAAACCATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGATTTGTTTTCGCATGGTAAGCTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCGGGAGCAGTTTTTATCAATGTGAGGATATCAAACCTTATGAGCAAGTGGTTTGGGGATGCCCAAAAACTTGTGGCTGCGGTATTTAGCCTGGCTTATAAGCTTCAGCCTGCCATCATTTTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGCCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTTATGGCTTTGTGGGACGGATTTACTACGGATCAGAATGCTCGAGTTATGGTCCTTGCAGCGACAAATCGTCCTTCAGAACTTGATGAAGCAATACTACGGCGTCTTCCTCAAGCCTTTGAAATCGGAATTCCTGACCAAAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATAGAGTTTGGTCATATAGCAGGCTTGTGTGAGGGTTACACTGGTTCAGATCTGTTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTGCTAGATGAAGAGAAGAAAGGAAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCATTGCCACTTCACTGAAGACAAAGGTTGCTGCAAGTGAATACGCTGGATTCAGCCTTCAGTCACCTTCAAGATGGTCGGTGCCTGGTGATTCAGGTGATTCTCAGATTCAGGCTGCAATCAATGAATTCTCTAAGCTTGTGGTTTCTCACATGATTAACCTCCAACCAGAATCCCAAGATCCTTAA 1179 0.4453 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKVLEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERTEILKVILKGERVEDNIEFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKAIATSLKTKVAASEYAGFSLQSPSRWSVPGDSGDSQIQAAINEFSKLVVSHMINLQPESQDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02082 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Vimu10g02082 392 CDD RecA-like_ATAD1 85 250 - -
Vimu10g02082 392 Gene3D - 253 336 - -
Vimu10g02082 392 Pfam AAA+ lid domain 275 310 IPR041569 -
Vimu10g02082 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 345 - -
Vimu10g02082 392 SMART AAA_5 118 254 IPR003593 GO:0016887
Vimu10g02082 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Vimu10g02082 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Vimu10g02082 392 Gene3D - 80 341 IPR027417 -
Vimu10g02082 392 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02082 Vimu-Chr10 30543777 30550772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02082 39 318 Calmodulin-binding Proteins AT3G56690 32.394 2.35e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02082 K22530 - gmx:100796908 729.554