Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02066 ATGCAGATATTCGTGAAAACTCTAACGGGGAAGACCATCACCCTTGAGGTGGAGTCAAGTGACACCATTGATAATGTCAAAACAAAGATTCAGGACAAAGAAGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAGGATGGTCGTACTCTCGCCGATTACAACATCCAAAAAGGTACTTTTTACTTTATCGTGTCCGACTCCAAGCACTTTCGTGCTGCTTGGCTGAGAAAGAGCATGCCTCAATCAACATTGCATCTTGTTTTAAGGCTTCGTGGTGGTATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAGTATAACCAGGATAAGATGATCTGCCGCAAGTAA 366 0.4536 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGTFYFIVSDSKHFRAAWLRKSMPQSTLHLVLRLRGGIIEPSLMALARKYNQDKMICRK 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02066 121 Gene3D - 1 101 - -
Vimu10g02066 121 CDD Ubl_ubiquitin 1 99 - -
Vimu10g02066 121 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Vimu10g02066 121 SUPERFAMILY Ubiquitin-like 1 105 IPR029071 -
Vimu10g02066 121 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vimu10g02066 121 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vimu10g02066 121 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vimu10g02066 121 SMART ubq_7 1 71 IPR000626 GO:0005515
Vimu10g02066 121 Pfam Ribosomal L40e family 101 121 IPR001975 GO:0003735|GO:0005840|GO:0006412
Vimu10g02066 121 PANTHER UBIQUITIN 1 110 - -
Vimu10g02066 121 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vimu10g02066 121 FunFam Predicted protein 101 121 - -
Vimu10g02066 121 Gene3D - 102 121 IPR038587 -
Vimu10g02066 121 FunFam Polyubiquitin 10 1 76 - -
Vimu10g02066 121 Pfam Ubiquitin family 3 65 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02066 Vimu-Chr10 30335163 30335904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02066 1 121 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 78.512 1.42e-61 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02066 K02927 - mus:103972470 178.333