Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02062 ATGAGCAACATCCCAAGATCTCTCACCGACTCCTCCCTCACCCTCTTCAACCTCGCCATATCCTCTTCTGATCCCTGGCCTTTCTCACTCATGGGGATTCTCAGCGATCATCATCATAACTCTCCAAAACACCATCACCACCATCATTACCACATGAGCTTTCACTTGCACATTCCTCACCTCCACTTTCACCACCACCACCACGAGAAGAAGGACCTCAAGGACGTTCCAAAAGGGTGTTTGGCGGTGTTAGTAGGCCAAGGCGAGGAGCAACAGAGGTTTGTCATCCCTGTCATGTACATGAACCACCCACTCTTCATGAAGTTGCTCAAGGAAGCCGAAGACGAATACGGCTTCCAGCAGAAAGGACCCATCACCATCCCGTGCCACGTCGAGCACTTCCGCACCGTCCAAGGCATCATCGACAGGGAGAAATACCTCCACCACCATGCTTGGTGCTTCAAAGTTTGA 471 0.5159 MSNIPRSLTDSSLTLFNLAISSSDPWPFSLMGILSDHHHNSPKHHHHHHYHMSFHLHIPHLHFHHHHHEKKDLKDVPKGCLAVLVGQGEEQQRFVIPVMYMNHPLFMKLLKEAEDEYGFQQKGPITIPCHVEHFRTVQGIIDREKYLHHHAWCFKV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02062 156 Pfam Auxin responsive protein 70 137 IPR003676 GO:0009733
Vimu10g02062 156 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 67 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02062 Vimu-Chr10 30251873 30252455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02062 75 135 Calmodulin-binding Proteins AT5G20810 57.377 1.07e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02062 K14488 - gmx:100526867 183.726