Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02060 TGTCAATTTTCTCCGGCAACTTCTTTCACTCTCTCTCTTGTTGACTTCGCCGATCACCGTCGCTACGCGGCCATGGGGCATTGTTGCAGCAAAAACATCGCCGTCAACAACGAGACGGTGCCCCCCGATCACCGCCCCAAGACTCCACATTACGCTCCGCCGTCTCCTCCCCCGGCTTCAGGGAGCTCGCTATCCGCCGCCACGCCGGGGAGGAACACGCCGGCGCACTCGTTTTCCACCAGCCCCTTCCCGAGTCCTCTCCCGCCCGGAGTGGCGCCGTCGCCAGCGAAGACTCCGGGGAGGAAGTTCCGGTGGCCGCTGCCGCCTCCCTCTCCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGCGGCAGGGAAAGGCGAGGCCGAAGGAAGGACCTATACCGGAGGAGCAAGGGGAGGGTGGCGGTGAGGGAGAGAGGTCGCTGGATAAGAGTTTCGGTTATGGGAAGAATTTTGGGGCGAAGTTCGAGTTGGGGAAGGAAGTGGGTCGAGGGCATTTCGGTCACACTTGTTGGGCGAAAGGGAAGAAGGGAGAACTTAAGGGACAATCCGTTGCTGTAAAAATCATATCCAAAGCTAAGATGACTTCCGCGATAGCAATTGAAGATGTGCGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATAAGAACTTGGTCAAGTTTTATGACGCATTTGAGGATGTCAACAACGTCTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGGAGATACCCAGAGGATGATGCCAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCATTTTGTCATCTTCAGGGAGTTGTTCACCGTGATCTAAAACCAGAGAATTTTCTATTTGTCTCAAAAGACGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTCTCTGATTTTGTCAGGCCAGAGCAACGCCTCAACGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACCTGTGGAGTATTGGGGTTATATCGTACATATTGTTATGTGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATTTTCCGGTCTGTGCTACGAGCTAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTTTGAACAAGGATCACAGAAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAATGAAAAGAATCCCATTCCTTTAGATATCTCGATTTACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGCAGCATTGAAGGCCCTCGCGAGAGCATTGACGGAAGATGAGCTATTCTACCTTAGAGCACAGTTTAACCTCTTGGATCCTAAAGAAGGCTGCGTATCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACAGATGCCATGAAAGAATCAAGGGCCCCTGACATTTTAAATCTGATGGAGGCACTCTCTTATAAAAAAATGGATTTCGAAGAGTTTTGCGCTGCTGCTATCAGTGTATACCAGCTGGAAGTTCATCCAGAATGGGATAGAATTGCCACAACGGCTTTTGAATACTTTGAGGAGACAGGAAACCGAGTCATTTCTGTTGAGGAGTTGGCTCAGGAGATGAATTTGGGTCCTTCAGCTTATTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACAATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1854 0.4806 CQFSPATSFTLSLVDFADHRRYAAMGHCCSKNIAVNNETVPPDHRPKTPHYAPPSPPPASGSSLSAATPGRNTPAHSFSTSPFPSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKARPKEGPIPEEQGEGGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDEDAVMKVIDFGLSDFVRPEQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNPIPLDISIYKLVKSYVRASPLRRAALKALARALTEDELFYLRAQFNLLDPKEGCVSLENFRVALMKNATDAMKESRAPDILNLMEALSYKKMDFEEFCAAAISVYQLEVHPEWDRIATTAFEYFEETGNRVISVEELAQEMNLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02060 617 CDD STKc_CAMK 162 424 - -
Vimu10g02060 617 MobiDBLite consensus disorder prediction 81 95 - -
Vimu10g02060 617 MobiDBLite consensus disorder prediction 46 60 - -
Vimu10g02060 617 FunFam Calcium-dependent protein kinase SK5 335 430 - -
Vimu10g02060 617 FunFam CDPK-related kinase 1 156 251 - -
Vimu10g02060 617 Pfam Protein kinase domain 163 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02060 617 SMART serkin_6 163 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02060 617 FunFam CDPK-related kinase 1 460 532 - -
Vimu10g02060 617 PANTHER SERINE/THREONINE-PROTEIN KINASE 147 587 - -
Vimu10g02060 617 Gene3D Phosphorylase Kinase; domain 1 157 252 - -
Vimu10g02060 617 ProSiteProfiles Protein kinase domain profile. 163 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02060 617 SUPERFAMILY EF-hand 457 602 IPR011992 -
Vimu10g02060 617 Gene3D - 464 532 - -
Vimu10g02060 617 MobiDBLite consensus disorder prediction 38 112 - -
Vimu10g02060 617 Gene3D - 443 572 - -
Vimu10g02060 617 ProSitePatterns Protein kinases ATP-binding region signature. 169 195 IPR017441 GO:0005524
Vimu10g02060 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vimu10g02060 617 MobiDBLite consensus disorder prediction 124 149 - -
Vimu10g02060 617 MobiDBLite consensus disorder prediction 61 80 - -
Vimu10g02060 617 SUPERFAMILY Protein kinase-like (PK-like) 162 448 IPR011009 -
Vimu10g02060 617 FunFam CDPK-related kinase 3 155 327 - -
Vimu10g02060 617 Gene3D Transferase(Phosphotransferase) domain 1 253 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02060 Vimu-Chr10 30242030 30249513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02060 73 608 EF-hand Containing Proteins AT3G50530 61.014 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu10g02060 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02060 K13412 - gmx:100803631 1038.1