Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02051 TTTCATGCCATCTCATGCAACAGTAACACAGACAGGGAAGCCCTTCTTTCATTCAAATCTCAAGTCAATAATGACCCAAAAAATGCTCTCTCTGGGTGGTCTATACACTCCAATCACTGCACCTGGTACGGTGTCACATGCTCCGAAGTTGGAAACAGGGTCCAATCTCTCAATCTACCAGGACTTTCCCTCTCTGGTAAACTCTCCCCTCAACTTTCCAACCTCACTTTCCTACATTCACTCGACCTTTCTGGCAACACTTTTCATGGCCAAATTCCTCGATCATTTGGCAATCTCTCTCTTCTCACTGCCATTCTATTATCTTACAACAATCTCAGTGGTACAATTCCATCACAACTGGGTTATCTCCACCGTCTACAAAGTTTAGACTTTTCTGTCAATAATCTCACAGGTCAGATTCCTCCATCATTTGCCAATCTCTCTTCTCTTCAGAATCTTTCCTTGGCAAGGAACCGTTTTGAGGGGGAGATTCCAACTGAACTTGGTAATCTCCCCAATCTTTCCTTTCTTCAAATCTCAGTAAACAATTTCTCTGGCAAGTTTCCCACTTCTATCTTCAACATGTCTTCCTTAGTCTTTTTATCCGTGACAGGGAACAATCTTACGGGTGAGTTACCACAAAATTTTGGCAATTTTCTTCCAAATTTAAAGAATCTAGTCCTGGCATCTAATAAGTTTGAAGGAGTAATTCCGAATTCCATATCCAATGCCTCACATCTTCAAGAGATTGACCTTGCCAACAATAAATTTACTGGACCTATACCTCTATTCTACAACTTAAAAAACCTTACCCGCCTCGTTCTTGGTAATAATTTTATCTCTTCCACAACCTCCTTAAATGTTCAGTTCTTTAATTCCCTTAGAGACTCCACCCAACTACAAATTCTCATGATCAATGATAACCTTTTGGCCGGGGATCTTCCAAGCTCTGTTGCTAATCTATCGCGGAATCTCCAACAATTATGTGTAGCCAATAATTTTCTTACTGGTACCATTCCTCAAGGAATGAAGAAATTCCAAAATCTCATATCCTTGTCTTTTGAAAACAATTCTTTCACTGGAGAGTTACCATCAGAAATAGGAGCACTCCATAATCTACAGCAACTTGTTATACACCACAACAGATTGTCTGGGGATATTCCAGACATTTTTGGCAATCTCACAAATCTCTTTAACCTTGTAATGGGAAATAACCAACTCTCGGGTAGAATTCACCAAAGTATTGGACAATGCAAGAGATTAAATTATCTTGACTTGCGATTGAATAGACTTGGTGGGACCGTACCAGATGAGATTTTTCAACTTTCTAGCTTAAGAACCTTGAATTTAGCAGGAAACTCTCTGCAGGGTCGGCTACCTCCTAGGGTGGGAACCATGAAACAGCTTGAGAACTTGTATATTTCTGACAACCAGTTATCAGGGAACATTCCTGCGGAAATAGAGGGGTGTTTGAGCTTGAAGTCGCTAACAATGGCAAGAAACAGATTCAATGGTTCGATCCCAACAAAAATTGGGAATTTAACATCCCTTCAGACTTTGGATTTATCATTAAACAGTCTCACTGGTGCTATTCCTGAAAGTTTCGGACAGCTCGAGTATATACAGAATTTAAATTTGTCTTTCAACCATTTGGAAGGGAAAATTCCTACAAAAGGTCTTTTTACGAACCTTACCAAGTTTGATCTTCGAGGTAACAATCAACTCTGTAGCCTTAGCAAGGAAATTGTACAAAATTTGGGAGTACTCCCGTGTGTTGTTGGCAAAAAGAAAAGAAAAATCTTACTCCCTACCATACTTGCAATAGTTGGTGCTGCTGCTTTGTTCATTTCACTGCTCTTTCTGTTTTGGAGAATGAAGAAGAAAAGAAAGGAGAGGAAAACCCTTGTGTCATCTGACCCTTTCAGGGGGTTGTCTCAAAATATAACTTATGGTGATATTCGGATGGCTACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGTTTTGGCTCCGTGTACAAGGGTGTGTTCAGCTTCAGCACTGGTGAAACCGTCACCCTTGCTGTCAAAGTCCTGGATCTGCAAGAAAGCAAAGCGTGTAAGAGTTTCAACTCGGAATGTGAAGCTTTGAAAAATGTCAGGCATCGGAACCTAGTAAAGGTTATCACTTCTTGCTCCAGCCTTGATTATAAAGGAGAGGAATTTAAGGCCCTGGTCATGCAATTCAAGCCCAATGGGAACTTGGACTTCAAAATACACCAAGGAGATGAAGAGTCAGGCTCCCTTCTAACCTTGATGCAAAGATTGAACATTGCAATCGATGTTGCTTCTGCTCTGGAGTACTTGCACCATGACTGCGATCCACCTATAGCGCATTGTGATCTGAAACCTGCCAATGTCCTTCTAGATGAAAATATGACTGCACATGTTGTAGATTTTGGATTGGCAAGGTTTTTGTGTCAAAACCCATCAGAGAAGCAGAGTAGCACTCTAGGACTGAAAGGATCAATTGGCTACATTGCCCCAGAATATGGTTTTGGAAGTAAGGCTTCAACTGAGGGTGATGTGTACAGTTTTGGGATCCTACTGCTAGAGATGTTCACAGGCAAAAGACCAACTGATGAAATGTTCAAAGAAGGGTTAAGCCTCAACAAATTTGTCTCAAGCATGGATGAGAATGAAGTAGTGAAGGTTGCTGATCGAAGGCTCATTGAAGATTATGAATATTCAACACAAAGCTCAAACAGTGATGATCATAGCAGTGGTTTTGACAGCAACACACATTGGTTGCATAAAGCTGAGGAGTGCATCGCTGATGTGATAAGAGTTGGTCTGAGTTGCACAGTTGATCAACCCAAAGAACGATGGAACATGAGAAAGGCCTTATCAAAATTGCAAGCTACAAATCACTCTATGCTGTCTTTTTGA 2934 0.4076 FHAISCNSNTDREALLSFKSQVNNDPKNALSGWSIHSNHCTWYGVTCSEVGNRVQSLNLPGLSLSGKLSPQLSNLTFLHSLDLSGNTFHGQIPRSFGNLSLLTAILLSYNNLSGTIPSQLGYLHRLQSLDFSVNNLTGQIPPSFANLSSLQNLSLARNRFEGEIPTELGNLPNLSFLQISVNNFSGKFPTSIFNMSSLVFLSVTGNNLTGELPQNFGNFLPNLKNLVLASNKFEGVIPNSISNASHLQEIDLANNKFTGPIPLFYNLKNLTRLVLGNNFISSTTSLNVQFFNSLRDSTQLQILMINDNLLAGDLPSSVANLSRNLQQLCVANNFLTGTIPQGMKKFQNLISLSFENNSFTGELPSEIGALHNLQQLVIHHNRLSGDIPDIFGNLTNLFNLVMGNNQLSGRIHQSIGQCKRLNYLDLRLNRLGGTVPDEIFQLSSLRTLNLAGNSLQGRLPPRVGTMKQLENLYISDNQLSGNIPAEIEGCLSLKSLTMARNRFNGSIPTKIGNLTSLQTLDLSLNSLTGAIPESFGQLEYIQNLNLSFNHLEGKIPTKGLFTNLTKFDLRGNNQLCSLSKEIVQNLGVLPCVVGKKKRKILLPTILAIVGAAALFISLLFLFWRMKKKRKERKTLVSSDPFRGLSQNITYGDIRMATNNFAAENLIGKGGFGSVYKGVFSFSTGETVTLAVKVLDLQESKACKSFNSECEALKNVRHRNLVKVITSCSSLDYKGEEFKALVMQFKPNGNLDFKIHQGDEESGSLLTLMQRLNIAIDVASALEYLHHDCDPPIAHCDLKPANVLLDENMTAHVVDFGLARFLCQNPSEKQSSTLGLKGSIGYIAPEYGFGSKASTEGDVYSFGILLLEMFTGKRPTDEMFKEGLSLNKFVSSMDENEVVKVADRRLIEDYEYSTQSSNSDDHSSGFDSNTHWLHKAEECIADVIRVGLSCTVDQPKERWNMRKALSKLQATNHSMLSF 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02051 977 SUPERFAMILY Protein kinase-like (PK-like) 636 968 IPR011009 -
Vimu10g02051 977 SMART LRR_typ_2 75 98 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 267 293 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 370 393 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 123 146 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 220 243 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 442 466 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 147 171 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 514 537 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 394 418 IPR003591 -
Vimu10g02051 977 SMART LRR_typ_2 195 218 IPR003591 -
Vimu10g02051 977 Pfam Protein tyrosine and serine/threonine kinase 663 881 IPR001245 GO:0004672|GO:0006468
Vimu10g02051 977 SUPERFAMILY L domain-like 323 579 - -
Vimu10g02051 977 FunFam LRR receptor-like serine/threonine-protein kinase EFR 286 597 - -
Vimu10g02051 977 SMART LRR_sd22_2 267 288 - -
Vimu10g02051 977 SMART LRR_sd22_2 322 351 - -
Vimu10g02051 977 SMART LRR_sd22_2 514 546 - -
Vimu10g02051 977 SMART LRR_sd22_2 466 485 - -
Vimu10g02051 977 SMART LRR_sd22_2 561 580 - -
Vimu10g02051 977 SMART LRR_sd22_2 123 149 - -
Vimu10g02051 977 SMART LRR_sd22_2 370 396 - -
Vimu10g02051 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vimu10g02051 977 FunFam LRR receptor-like serine/threonine-protein kinase EFR 631 744 - -
Vimu10g02051 977 Gene3D Ribonuclease Inhibitor 265 585 IPR032675 -
Vimu10g02051 977 PANTHER LEUCINE RICH REPEAT KINASE 2 294 971 - -
Vimu10g02051 977 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 10 121 - -
Vimu10g02051 977 SUPERFAMILY L domain-like 8 294 - -
Vimu10g02051 977 ProSiteProfiles Protein kinase domain profile. 660 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02051 977 Pfam Leucine rich repeat 221 278 IPR001611 GO:0005515
Vimu10g02051 977 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Vimu10g02051 977 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vimu10g02051 977 FunFam Leucine-rich repeat protein kinase family protein 143 284 - -
Vimu10g02051 977 Gene3D Ribonuclease Inhibitor 7 164 IPR032675 -
Vimu10g02051 977 Gene3D Ribonuclease Inhibitor 165 264 IPR032675 -
Vimu10g02051 977 Gene3D Transferase(Phosphotransferase) domain 1 746 975 - -
Vimu10g02051 977 ProSitePatterns Protein kinases ATP-binding region signature. 666 692 IPR017441 GO:0005524
Vimu10g02051 977 Gene3D Phosphorylase Kinase; domain 1 622 744 - -
Vimu10g02051 977 Pfam Leucine rich repeat N-terminal domain 9 48 IPR013210 -
Vimu10g02051 977 SMART serkin_6 660 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02051 977 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 745 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02051 Vimu-Chr10 30140882 30143962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02051 10 957 Receptor kinase-like Gene Family AT3G47570 41.667 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu10g02051 PK_Tyr_Ser-Thr 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02051 - - gmx:100776054 1439.86