Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02050 ATGCTTACAGGTGAGTTACCAAAAAATTTTGGCAATTTTCTTCCAAATTTAAAGATTCTATATCTGGCAACTAATTTGTTTGAAGGAGTAATTCCGAATTCCATATCCAATGCCTCACATCTTCAAGAGATTGACCTTTCCAACAATATGTTTACTGGACCCATACCTCTATTCCACAACTTAAAAAACCTTACCCGCCTCATTCTTGGTAATAATTTTCTCTCTTCCACAACTTCATTAAATTTTCAGTTCTTTGATTGCCTTAGAAACTCCACCAAGTTGCAAGAACTCCGGATCTATGGAAACCACTTGACTGGGGAGCTTCCAAATTCTTTTGCTAATCTGTCGTCAAATCTCCAACATTTCTGTGTTGCTGATAACTCTTTTTCTGGCGGCATTCCTCAAGGAATGAAGAAATTTGAAGATATCATATCCTTGTCCTTTGAATATAACTTTTTCACTGGGGAGTTACCATCAGAAATAGGAGCACTAAACAATCTACAGCAACTTATGATAAACAACAACAGATTGTCTGGAGACATTCCAGTCATTTTTGGCAATCTCACAAATCTGTTTAACCTTGAAATGGGAAATAACCAACTCTCGGGTAGAATTCTCCAGAGTATTGGACAATGCAAGAGATTAAATTATCTTGACATGAAAATGAATAGACTTGGTGGGACCGTACCAGATGAGATTTTTCAACTTCCTAGCTTAATTACGTTGTATTTAGCTGGAAACTCTCTGCAGGGTCCGCTACCTCCTATGGTGGGCACCATGAAACAGCTTGAGACCATGGATATTTCTGACAACCAGTTGTCAGGGAACATTCCTGTGGAAATAGGTGGGTGTTTGAGCTTGAAGTCGCTAACGATGGCAAGAAACAGATTCAATGGTTCGATCCCAACAAAAATTGGGAAATTAGCATCCCTTGAGACTTTGGATTTATCATTAAACAGTCTCACTGGTACTATTCCTGAAAGTTTAGGACAGCTCGAGTATATACAGAAATTAAATTTGTCTTTCAACCATTTGGAAGGGGAGGTTCCTATGAAAGGTCTTTTTACGAACCTTACCAAATTTGATCTTCGAGGTAACAATCAACTCTGTAGCCTTAACAAGGAAATTGTCAAGAATTTTGGAGTACTCCTGTGTGCTGTTGGCAAAAAGAAAAGAAAGATTTTACTGCCTATCATTCTTGCAGTCGTTGGTGCTATTGCTTTGTTCATTTCTACGCTCTTAGTATTTTGGACAATGATGTCTGGAGATAAGAAAAGAAAAGAGGCGAAAACTAGTGTGTCATCGGCCCCTCTTATTAAAGGGCTGCCTCAAAATATTTCTTACGGCGATATTCTCACTGCCACAAACAACTTTGCAGCTGAAAACTTGATCGGAAAAGGAGGCTTTGGTTCTGTGTATAAGGGTATGTTCAGGTTCAGCACTGGCGAAACCGCCACTCTTGCTGTCAAAGTCCTGGACCTGCAGCAGAGCAGAGCTTCCAAAAGTTTCGTTGCTGAGTGCGAAGCTTTGAAAAATGTCAGGCATCGGAACCTAGTAAAGGTTATCACTTCTTGCTCCAGCCTTGATTATAAAGGAGAGGAATTTAAGGCCCTTGTCATGCAATTCATGCCCAATGGCAACTTGGACATGAAAATACACCCGGAAGATGAAGAGTCGGGATCTTTTCTAACCTTGATGCAAAGACTGAACATTGCCATTGATGTTGCTTTTGCTATGGAGTACTTGCACCATGGCTGCGACCCACCAATAGTTCATTGTGATCTGAAACCTGCCAATGTCCTTCTCGATGAAAATATGGTGGCGCATATTGCAGATTTTGGATTAGCAAGGTTTCTCTCCCAAAATACATCAGAGAAGCAAAGCACTCTAGGGCTGAAAGGATCAATCGGCTACATTGCCCCAGAATATGGTCAAGGAGGCAAGGCTTCAACTGAGGGTGATGTGTACAGTTTTGGAACTCTTCTGTTAGAGATGTTTACGGCCAAAAAACCAACTGATGAAATATTCAAAGAAGGATTGAGCGTAAGCAAATTTTTGTCAGCCATGGATGAGAATGAAATGTTGAAAGTCGTTGATAGAAGGCTTATTGATGGTTATGAATATTGGAAACAAAGCTCAAGCAGTGAGGATTATAGCGATGAACTTAAGGGAAAAACAGATTGGATGCGTAATGCGGAGGAGTGCATAGCTGATGTGATAAGACTTGGGTTTTGTTGCATGGCTGATCAACCCAAAGAACGATGCAGCATGAGAGACGCCTCATCAAAATTGCAAACAATTAAGTACTCTATGCTGCCCTTTCAACTTTAG 2331 0.4033 MLTGELPKNFGNFLPNLKILYLATNLFEGVIPNSISNASHLQEIDLSNNMFTGPIPLFHNLKNLTRLILGNNFLSSTTSLNFQFFDCLRNSTKLQELRIYGNHLTGELPNSFANLSSNLQHFCVADNSFSGGIPQGMKKFEDIISLSFEYNFFTGELPSEIGALNNLQQLMINNNRLSGDIPVIFGNLTNLFNLEMGNNQLSGRILQSIGQCKRLNYLDMKMNRLGGTVPDEIFQLPSLITLYLAGNSLQGPLPPMVGTMKQLETMDISDNQLSGNIPVEIGGCLSLKSLTMARNRFNGSIPTKIGKLASLETLDLSLNSLTGTIPESLGQLEYIQKLNLSFNHLEGEVPMKGLFTNLTKFDLRGNNQLCSLNKEIVKNFGVLLCAVGKKKRKILLPIILAVVGAIALFISTLLVFWTMMSGDKKRKEAKTSVSSAPLIKGLPQNISYGDILTATNNFAAENLIGKGGFGSVYKGMFRFSTGETATLAVKVLDLQQSRASKSFVAECEALKNVRHRNLVKVITSCSSLDYKGEEFKALVMQFMPNGNLDMKIHPEDEESGSFLTLMQRLNIAIDVAFAMEYLHHGCDPPIVHCDLKPANVLLDENMVAHIADFGLARFLSQNTSEKQSTLGLKGSIGYIAPEYGQGGKASTEGDVYSFGTLLLEMFTAKKPTDEIFKEGLSVSKFLSAMDENEMLKVVDRRLIDGYEYWKQSSSSEDYSDELKGKTDWMRNAEECIADVIRLGFCCMADQPKERCSMRDASSKLQTIKYSMLPFQL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02050 776 PRINTS Leucine-rich repeat signature 308 321 - -
Vimu10g02050 776 PRINTS Leucine-rich repeat signature 263 276 - -
Vimu10g02050 776 FunFam LRR receptor-like serine/threonine-protein kinase EFR 429 542 - -
Vimu10g02050 776 Pfam Protein tyrosine and serine/threonine kinase 461 763 IPR001245 GO:0004672|GO:0006468
Vimu10g02050 776 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515
Vimu10g02050 776 SUPERFAMILY L domain-like 2 156 - -
Vimu10g02050 776 Gene3D Transferase(Phosphotransferase) domain 1 543 772 - -
Vimu10g02050 776 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 543 774 - -
Vimu10g02050 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Vimu10g02050 776 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 87 379 - -
Vimu10g02050 776 Gene3D Ribonuclease Inhibitor 1 60 IPR032675 -
Vimu10g02050 776 ProSitePatterns Protein kinases ATP-binding region signature. 464 490 IPR017441 GO:0005524
Vimu10g02050 776 Gene3D Ribonuclease Inhibitor 61 379 IPR032675 -
Vimu10g02050 776 SUPERFAMILY Protein kinase-like (PK-like) 434 764 IPR011009 -
Vimu10g02050 776 Gene3D Phosphorylase Kinase; domain 1 440 542 - -
Vimu10g02050 776 SUPERFAMILY L domain-like 118 373 - -
Vimu10g02050 776 ProSiteProfiles Protein kinase domain profile. 458 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02050 776 PANTHER OS04G0122200 PROTEIN 2 768 - -
Vimu10g02050 776 SMART serkin_6 458 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02050 776 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Vimu10g02050 776 SMART LRR_typ_2 188 212 IPR003591 -
Vimu10g02050 776 SMART LRR_typ_2 308 332 IPR003591 -
Vimu10g02050 776 SMART LRR_typ_2 14 37 IPR003591 -
Vimu10g02050 776 SMART LRR_typ_2 61 87 IPR003591 -
Vimu10g02050 776 SMART LRR_typ_2 236 260 IPR003591 -
Vimu10g02050 776 SMART LRR_typ_2 164 187 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02050 Vimu-Chr10 30106006 30108438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02050 3 768 Receptor kinase-like Gene Family AT3G47570 39.796 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu10g02050 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02050 - - gmx:100776054 1116.68