Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02045 TTGCTGTCATGTTTCCTTCTTCCTCATTTTCATGACATCGAATGTAACACAGACTCAGACAGAGATGCCCTTCTTTCTTTCAAATCCCAACTGAGTGATCCAAAGAATTCCCTGTCTGGTTGGACTTTAGATTCCAATCCCTGCATCTGGAGCGGTGTTATCTGCTCCCAAGTTGGAGAGAGGGTTCAATGTCTCGGTCTATCAGGACTTGAACTTTCTGGAAAACTACACCCTCGCCTTTCCAATCTCACTTACCTTAATTTGCTTGATCTTTCCCACAACAATTTCCATGGTGAAATTCCCCACGAGTTTGGTAATCTCCATCGTCTGCTAGCATTAGACTTGTCATCCAATAATCTTGGAGGTAAAGTACCTTCATCACTAGGCAACCTCATTTCCATTGAGAATCTTGTCCTGGCAAGGAATCGTTTTGTGGGTGAGATTCCCACTGAAATCGGGAATCTCCGCACTCTTTCCTACCTTGAACTTTCTGAGAACTACTTCTCTGGTGAGTTTCCTATTTCTATCTCCACTATCTCTTCCTTAGAGTCATTATCTGTTTCAAAGAACAATCTATCAGGCAAGTTGTCGCAAAATTTTGGCCATGCCCTTTCAAGTTTAACCTTTCTCTCTCTGGCATTCAATAGTTTCGATGGGGTAATTCCTAATTCCATATCCAATGCCTCGAACCTTCAATATATTGACCTTGCTAACAATAAATTTAATGGCCCCTTACCTCTATTCAACAACTTGCTAAACCTTACCTACTTGGCTCTTGATAATAACTTTCTCTCGTCCACGACCTCGTTGACTCTTCAGTTCTTTGATTCTCTCAGGAACTCCACCTTGTTGAACATGCTGAGGATTAATGATAACTATTTGGCTGGGGAGCTTCCAAGCTCTTTCGCGAATCTGTCTAGCGATCTCAAATTATTCCATGTTGGACACAACTGGTTAACCGGCAACATTCCACACGGAATTAAGAAATTTCAAAATCTCCTCTCCTTGTCCTTTGAAAATAATTGTTTCACTGGAGAATTACCATCAGAAATGGGAGCTCTACAGAGACTGCAGGATATTGATGTACATGGGAACAGATTGTCCGGGGAGATTTCTAACATTTTTGGCAATTTAACAAATCTTTATACCCTTGCAATGGGAAATAATCAGTTCTCTGGCAGAATCCCCACAAGTCTTAGACAATGCAAGGGGTTATTTTCTCTTGATTTGAGAATGAATAGGCTCATTGGGACCATACCAAAGGAGGTCTTTCAGCTTTCTTCTTTAGCATCCTTGTATTTGGCTAAAAATTCCCTGCATGGTTCGCTTCCTAATGAGGTCGGCACCATGACACAACTTGAGACCTTGGATGTTTCTGGCAACCAGTTGTCAGGGAACATTCCTAAGGAAATAGAGTCCTGTTTCAGCTTAAAGACGCTTGTGATGGCAAGAAACAAATTCAGTGGAGCAATCCCAACTAATCTTGGGAATTTAGCATACCTTCAGACTTTGGATTTATCATCAAACAATCTCATTGGCCTTATTCCGGTAAGTTTAGAAAAGCTCCGTCACATACAGACATTAGATTTGTCTTTCAACCAGTTGGAAGGGGAGATTCCAATTAATGGTGTTTCTATGAACATTAGCCAGTTTCATTTTCGAGGGAACAATCAACTGTGCAGCTCAAACAAGGAAATCATGCAGAATTTGGGAGTACTCCTGTGTACTGTTGGTAAAAGGAAGAAAAAGATTCTAGTCCCTATCATCCTTGCAGTTGTTGTTGCTACTGCTCTGTTAATTTCAATGCTCCTTCTATTTTGGACAACAACGCCCCGAAGGAAGAAAATAAATGAGAGGAAAACTGGGGTATCAGTGGCTCCTTTCAGAGGGTTACCTCAAAAAATATCTTATGGTGATATTCGGATAGCTACAAATAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAAGCTTTGGCTCTGTGTATAAGGGTGTTTTCAGCTTCAGCACAGGTGAAACTGCCACCCTTGCTGTGAAAGTCTTGGAGCTGCAACAAAGCAAAGCTTCTCGGAGTTTCAATACTGAATGTGAAGTTTTGAAAAATGTTAGGCATCGCAACCTGGTGAAGGTTATCACTTCTTGTTGCAGCATTGATTATAAAGGACAGGAATTCAAGGCCCTTGTTCTGCAACTCATGCCCAATGGTAACTTGGACGTAAGCCTACACCCGGAAAACGAGTCGGGGGGATCCTTTCTAAACTTGTTGCAAAGATTGAACATTGCTATTGATGTTGCTTCTGCTATGGACTATTTGCACCATGATTGTGATCCACCAATACTGCATTGTGATCTGAAACCCGCCAATGTCCTTCTAGATGAAACTATGGTTGCACATGTTGCTGATTTTGGATTGTCAAGGTTTCTCTATCAAAATAGGCCCGAGAGGCAGAGTACCACTCTGGGAATGAAGGGATCAATCGGCTATATTGCCCCAGAATATGGTTTTGGAAGCAAGGCTTCAACTGAGGGTGATGTGTACAGTTTTGGGATTCTACTGCTAGAGATGTTCACAGGTAAAAGACCAACTGATGAAATGTTCAAAGAAGGGTTAAACCTCAACAAATTTGTCTCAAGCATGGATGAGAATGAAGTAGTGAAGGTTGCTGATAGAAGGCTCATTGAAGATTATGAATATTCAACACAAAGCTCAAACAGTGATGATCGTAGCAGTGGCTTTGACAGCAACACACATTGGTTGCATAAAGCTGAAGAGTGCATCGCTCATGTGTTGAGAGTAGGTCTGAGTTGCGCTACTGATCAACCCAAAAAACGATGGAGCATGAGAGAGGCCTCATCAAAATTGCAAGCTATTAAACACTCTATGCTCTCTTTTTGA 2895 0.4145 MLSCFLLPHFHDIECNTDSDRDALLSFKSQLSDPKNSLSGWTLDSNPCIWSGVICSQVGERVQCLGLSGLELSGKLHPRLSNLTYLNLLDLSHNNFHGEIPHEFGNLHRLLALDLSSNNLGGKVPSSLGNLISIENLVLARNRFVGEIPTEIGNLRTLSYLELSENYFSGEFPISISTISSLESLSVSKNNLSGKLSQNFGHALSSLTFLSLAFNSFDGVIPNSISNASNLQYIDLANNKFNGPLPLFNNLLNLTYLALDNNFLSSTTSLTLQFFDSLRNSTLLNMLRINDNYLAGELPSSFANLSSDLKLFHVGHNWLTGNIPHGIKKFQNLLSLSFENNCFTGELPSEMGALQRLQDIDVHGNRLSGEISNIFGNLTNLYTLAMGNNQFSGRIPTSLRQCKGLFSLDLRMNRLIGTIPKEVFQLSSLASLYLAKNSLHGSLPNEVGTMTQLETLDVSGNQLSGNIPKEIESCFSLKTLVMARNKFSGAIPTNLGNLAYLQTLDLSSNNLIGLIPVSLEKLRHIQTLDLSFNQLEGEIPINGVSMNISQFHFRGNNQLCSSNKEIMQNLGVLLCTVGKRKKKILVPIILAVVVATALLISMLLLFWTTTPRRKKINERKTGVSVAPFRGLPQKISYGDIRIATNNFAAENLIGKGSFGSVYKGVFSFSTGETATLAVKVLELQQSKASRSFNTECEVLKNVRHRNLVKVITSCCSIDYKGQEFKALVLQLMPNGNLDVSLHPENESGGSFLNLLQRLNIAIDVASAMDYLHHDCDPPILHCDLKPANVLLDETMVAHVADFGLSRFLYQNRPERQSTTLGMKGSIGYIAPEYGFGSKASTEGDVYSFGILLLEMFTGKRPTDEMFKEGLNLNKFVSSMDENEVVKVADRRLIEDYEYSTQSSNSDDRSSGFDSNTHWLHKAEECIAHVLRVGLSCATDQPKKRWSMREASSKLQAIKHSMLSF 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02045 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Vimu10g02045 964 SMART serkin_6 647 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02045 964 ProSiteProfiles Protein kinase domain profile. 647 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02045 964 Gene3D Ribonuclease Inhibitor 174 270 IPR032675 -
Vimu10g02045 964 Gene3D Phosphorylase Kinase; domain 1 630 730 - -
Vimu10g02045 964 Pfam Protein tyrosine and serine/threonine kinase 650 868 IPR001245 GO:0004672|GO:0006468
Vimu10g02045 964 ProSitePatterns Protein kinases ATP-binding region signature. 653 679 IPR017441 GO:0005524
Vimu10g02045 964 PANTHER RECEPTOR-LIKE PROTEIN 55 309 958 - -
Vimu10g02045 964 SMART LRR_typ_2 378 402 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 498 521 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 83 106 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 251 277 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 354 377 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 522 546 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 107 131 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 204 227 IPR003591 -
Vimu10g02045 964 SMART LRR_typ_2 450 474 IPR003591 -
Vimu10g02045 964 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 732 964 - -
Vimu10g02045 964 FunFam Inactive leucine-rich repeat receptor-like protein kinase 280 570 - -
Vimu10g02045 964 Gene3D Transferase(Phosphotransferase) domain 1 732 962 - -
Vimu10g02045 964 Gene3D Ribonuclease Inhibitor 271 424 IPR032675 -
Vimu10g02045 964 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 32 279 - -
Vimu10g02045 964 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Vimu10g02045 964 Pfam Leucine rich repeat 407 463 IPR001611 GO:0005515
Vimu10g02045 964 SUPERFAMILY L domain-like 17 306 - -
Vimu10g02045 964 SUPERFAMILY L domain-like 312 562 - -
Vimu10g02045 964 FunFam LRR receptor-like serine/threonine-protein kinase EFR 620 731 - -
Vimu10g02045 964 Pfam Leucine rich repeat N-terminal domain 18 56 IPR013210 -
Vimu10g02045 964 SUPERFAMILY Protein kinase-like (PK-like) 623 954 IPR011009 -
Vimu10g02045 964 PRINTS Leucine-rich repeat signature 522 535 - -
Vimu10g02045 964 PRINTS Leucine-rich repeat signature 501 514 - -
Vimu10g02045 964 Gene3D Ribonuclease Inhibitor 16 173 IPR032675 -
Vimu10g02045 964 Gene3D Ribonuclease Inhibitor 432 567 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02045 Vimu-Chr10 30021454 30024484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02045 18 959 Receptor kinase-like Gene Family AT3G47570 38.684 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu10g02045 PK_Tyr_Ser-Thr 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02045 - - gmx:100776054 1268.45