Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02042 TTGAATTCAATTCAGATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACCTTGGAAAACATGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGATTGGCCTGGGAGACCAAGAGAGACTCTCTCAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACCGATAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTCACCTTTAGAGACCCAAATTCTGCGGCAAGGGCTTGTCTCAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAACCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCCACAACAGGAAGAATAAAATTCAGTAGCCCTTCATGGAATATGGCACCAGTCCCATTGCAAGGCACCTCCACATATTACAATCAACACATACCTCACTACCCATTTCCCTATCCAACCTACAGGTATCCTGGTTTTACTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAATTTCCCCTCCGCTGGTATCCAGCGTATTGCCAGCCCTTTTATGGCCTTGGCAGACAGATTATTCCAACAACCTATGTGAAAAAGGTCATACCAGACACTTCTCCTCGGGAGCTCACAGTTGTTGGTTTTTCAGAACCTATTTCAGCTTCTCCCTCAATTCCCACCACTGGATTAGTCACCGGAACAGTACCTGCGACAGGAGTGGTAGAATCCCCTCAAGAACAGACATCTTCAACTACTTAA 777 0.4453 MNSIQMSQPRQNKMMSPNLGKHVGDTTYTKIFVGGLAWETKRDSLKRYFDQFGEILEAVVITDRITGRSKGYGFVTFRDPNSAARACLNPYPVIDGRRANCNLAALGAQKFDPSTTGRIKFSSPSWNMAPVPLQGTSTYYNQHIPHYPFPYPTYRYPGFTHPQDLYEMNYNNAYGGQQFPLRWYPAYCQPFYGLGRQIIPTTYVKKVIPDTSPRELTVVGFSEPISASPSIPTTGLVTGTVPATGVVESPQEQTSSTT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02042 258 SUPERFAMILY RNA-binding domain, RBD 12 104 IPR035979 GO:0003676
Vimu10g02042 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Vimu10g02042 258 CDD RRM_RBM24_RBM38_like 29 104 - -
Vimu10g02042 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 86 IPR000504 GO:0003723
Vimu10g02042 258 SMART rrm1_1 30 102 IPR000504 GO:0003723
Vimu10g02042 258 PANTHER BOULE-RELATED 10 221 - -
Vimu10g02042 258 Gene3D - 1 117 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02042 Vimu-Chr10 29976493 29977907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02042 1 159 C2H2 Transcription Factor Family AT2G19380 28.889 5.00e-15 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02042 10 29976493 29977907 Vimu10g02042 10 29976493 29977907 ECH