Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02041 ATGGCCGTTCCTGAGAATGTCGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAATAGTGTAGTGTCATCGGACTCGGGCGAGGTTGAACAATCGAAACCCCGAAGCGGGTCCATCAACGGCGATCAGAAGCTGAACAACGGCGTCTTCAACCACCAAGATAGAGTTCCTAGCTCTATGTCAGTGTCCAATGGCAATTATAACTACAAGGCTCAAATGGGTCAGATGCACGGAAATGGGGTGAGCAATGATGGATATGGGATGAATGAGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAAGAATTTGTGCCCCATTCACTAACCAATAATCTTGGCTACCTGCCTGGACCTGGTGCCGGTACCGGTAATGGTACTGGATTTGGTTACCCTAATAATTTTATTATGCTCAATGGTTATGGTAATGCTAATGGTCAAACTAACAGAAGGAGGAAGAATAATTATAATCATGGAAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAGGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAGTTGGCAGCACTGTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGGTTTGCCTTCATCGAGTTTACAGACGAAGAAGGTGCAAGAGCTGCTTTGAGCCTGTCGGGAACCATGCTCGGATATTACCCTTTGCGAGTTCTGCCTTCAAAAACTGCTATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCGAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACTCTGGCCGAGAGTGCAATTGCTGCTCTAAGCTGTAGTGGTGTGATTCTTGGTTCATTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGATCGCGTGCTCCTCGTCCTTCTATGCACTGA 1137 0.4468 MAVPENVGAKIGSSSQNLDNSVVSSDSGEVEQSKPRSGSINGDQKLNNGVFNHQDRVPSSMSVSNGNYNYKAQMGQMHGNGVSNDGYGMNEENGGESFKRDMRDLEELLSKLNPMAEEFVPHSLTNNLGYLPGPGAGTGNGTGFGYPNNFIMLNGYGNANGQTNRRRKNNYNHGKRRVNHKIDMEKREEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02041 378 FunFam Polyadenylate-binding protein-interacting protein 10 284 362 - -
Vimu10g02041 378 SUPERFAMILY RNA-binding domain, RBD 164 269 IPR035979 GO:0003676
Vimu10g02041 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Vimu10g02041 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Vimu10g02041 378 SUPERFAMILY RNA-binding domain, RBD 281 372 IPR035979 GO:0003676
Vimu10g02041 378 CDD RRM1_CID8_like 191 270 IPR034823 -
Vimu10g02041 378 MobiDBLite consensus disorder prediction 1 58 - -
Vimu10g02041 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 366 IPR000504 GO:0003723
Vimu10g02041 378 FunFam Polyadenylate-binding protein-interacting protein 11 156 270 - -
Vimu10g02041 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 107 371 - -
Vimu10g02041 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Vimu10g02041 378 SMART rrm1_1 291 362 IPR000504 GO:0003723
Vimu10g02041 378 SMART rrm1_1 194 264 IPR000504 GO:0003723
Vimu10g02041 378 MobiDBLite consensus disorder prediction 9 58 - -
Vimu10g02041 378 CDD RRM2_CID8_like 286 367 IPR034825 -
Vimu10g02041 378 Pfam Ataxin-2 C-terminal region 109 122 IPR009818 -
Vimu10g02041 378 Gene3D - 154 270 IPR012677 -
Vimu10g02041 378 Gene3D - 277 372 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02041 Vimu-Chr10 29953215 29957465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02041 195 361 Eukaryotic Initiation Factors Gene Family AT1G34140 24.561 1.04e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02041 - - gmx:100788102 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02041 10 29953215 29957465 Vimu10g02041 10 29953215 29957465 ECH