Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02034 ATGAGTGGCCGGTTTTCTCGCACAATTTACGTCGGCAACTTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTCTTCTACAAGTATGGTCGTATAATGGATATTGAATTGAAGATTCCTCCCCGTCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGTTTACGGGTGGAACTTGCTCATGGAGGTCGAGGACCATCCTCAAGTGATCGACGTGGATATGGAGGAAGTGGTGGGGCTGGGGCTGGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCTCGCGACAGTGAAGTGATTTGTGGCTGCTCCCTCTATTTGCATCTTGCCAGATGGGCTGTGACCTCTGGCATTGGTAGACAGCCTTTCATCTGTGATTTCTGCAGCTGCTGCGACACAATGATTTGGTGA 570 0.4667 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGAGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEVICGCSLYLHLARWAVTSGIGRQPFICDFCSCCDTMIW 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02034 189 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 151 - -
Vimu10g02034 189 SUPERFAMILY RNA-binding domain, RBD 6 149 IPR035979 GO:0003676
Vimu10g02034 189 CDD RRM1_SF2_plant_like 8 79 - -
Vimu10g02034 189 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vimu10g02034 189 MobiDBLite consensus disorder prediction 81 100 - -
Vimu10g02034 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vimu10g02034 189 Gene3D - 2 113 IPR012677 -
Vimu10g02034 189 Gene3D - 115 177 IPR012677 -
Vimu10g02034 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vimu10g02034 189 FunFam serine/arginine-rich splicing factor SR34A-like 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02034 Vimu-Chr10 29736616 29738859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02034 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 2.08e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02034 K12890 - gmx:100786491 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02034 10 29736616 29738859 Vimu10g02034 10 29736616 29738859 ECH