Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02028 ATGGCTGCTATGGATACCGGTGTTCAGGGATGCATCTTATCTGTTTTGATTCTCCACGATGAGGAAATCGCAGTCACCGCCGAGAAGATCAACGCTTTGTTGAAGGCTGCCAATGTCAACGTTGAGTCCTACTGGCCAAGCCTCTTCGCCAAGCTCGCTCAGAATAAGAACATCGAAGACCTCATCTTGAACGCCGGTTCAGGCGGAGGTGCCGCCGTTGCCGTTGCCGCTCCCGCCGCCGGTGGTGCTGGTGCCGCTGCAGCAGCACCCGCCGCTGAGGAAAAGAAGGTAAAATGTCGTGAATATGTTGTTTACCGTGTGGTGCTAGCGAATGGTTAA 339 0.5428 MAAMDTGVQGCILSVLILHDEEIAVTAEKINALLKAANVNVESYWPSLFAKLAQNKNIEDLILNAGSGGGAAVAVAAPAAGGAGAAAAAPAAEEKKVKCREYVVYRVVLANG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02028 112 CDD Ribosomal_P1 9 64 - -
Vimu10g02028 112 FunFam 60S acidic ribosomal protein P1 3 66 - -
Vimu10g02028 112 Gene3D - 6 66 IPR038716 -
Vimu10g02028 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 4 97 - -
Vimu10g02028 112 Pfam 60s Acidic ribosomal protein 25 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02028 Vimu-Chr10 29683548 29683970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02028 4 96 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 52.688 2.25e-27 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02028 K02942 - gmx:100801741 123.635