Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02021 ATGTTTTCCGTTTTCACCACAGCCATTTCACGAAAGACAATTTGGTGTAGTTGGGCATTGCAGAGATGGTGTTACCACTTGCTCTGTTTGGTAACTGTTGGTGTTCGTGTTCTTCTACGATCTTGTGTCCATTCCCACTACCAAACCCACCCTCTCGTTATTCTTCAACCTTTCACACTAAACTTCAGTCTCAACCCCAATGCTCACTCGCTAAAATCCACGTCAAACCCCAACTATCAAATCGCGACTCCATTCGTCGCCGTCGCAGCACCAATTCCCTTCCCATTACTGATGCTCAATCCGGTAGCCTCGTTCTTTGCTCTGTTTCAAGAAATTGGGATTGGCTTTGAGGAAACTCAAGTTCTCTTCTCCAACAACCCTGACCTAACCTCTGTGTCTGTAGAATCATTGCGCGCTCGCCTTAGTTCTCTACGATCTCTCGACTTCGACCCTCTCGCTCTCGGCAAATTAATCACAAAGCGTCCAACTGTCCTAACAGACAACCAAATTGATCCTTTGTTGACCTTCCTTCGAGACGAATTGCAAGGAAAACTCGAGAAGCCGCGACTGAATCGCCTCTTATCCTCTACGGAACAAAATGTATTGACGAGTTTTCCTCAGAAGGTTCGATTCCTCGTTGACCGGGGAATCCCCGTTGACCAGGTTGTGCATGTGCTCAACAAAGTGAGTTTGCCAAAGGTCTTGTGTGGCAGGTCGGTTGATGAAATCGATAGAACTTTAGCTTTCTTCGAACCCTTTGGTGGCATTGATTTGATTCTTAAACGCCCTCAAATTTTGAACCATGATTTGGATGCTCAAATTATTCCAAGAGTGAATGTTCTGATGGAGCTTAGTGATGGAGATGTGGATAGTGTTGGGAAAGTGTTGGTTAGGTTTCCCCTTTTTTTGAACTATAGTGTGGAACATGTGGAGGGACATGTTGAATTTTTGAGTTCTTTTGCTGAGCTAGATTACAGACAGATATTTAGGATAATACAAGTGTATCCGGCTGTTGTTACTGCCAGCAGAGAGAGGAAACTGCGTCCAAGAATACAGTTTCTCAAGGACTGTGGGTTAGACTCAGATGAAATCTTCAAGTTCTTGATTAAAGCGCCCACATTTCTCAGCACTTCATTCCATGAGAACATTGCATATAAGCTGGTGTTGCTGGTGAAGATTGGGTATAGGTTCAGGACAAAGGACTTCGCAGTGGCAGTTAGGTCTGCCACTAGGACAAACAGTTTGAACATGCAGAAGGTGATTGGTATGTTCTTGAATTATGGGTTTTCATGCGAAGAGATCGTTGCCATGAGCAAGAAGCATCCACAGATACTGCAGTATAATCACGCTTCTTTGGAGATGAAGATGGAGTACTTGATAGAGGAAATGGGGCGTGACACTGAGGAGTTACTGGTTTTTCCTGCATTCCTTGGGTACAAGTTAGATGATAGGATTAAGCATAGGTATGAAGTGAAGAAGAGTGTTAGAGGTGCCGGAATGTCTATCAATAAGCTTTTATCTGTTTCCGAGGAGACATTCACTGGCAAACCAAAAAAGGCCCATGCATAG 1569 0.4417 MFSVFTTAISRKTIWCSWALQRWCYHLLCLVTVGVRVLLRSCVHSHYQTHPLVILQPFTLNFSLNPNAHSLKSTSNPNYQIATPFVAVAAPIPFPLLMLNPVASFFALFQEIGIGFEETQVLFSNNPDLTSVSVESLRARLSSLRSLDFDPLALGKLITKRPTVLTDNQIDPLLTFLRDELQGKLEKPRLNRLLSSTEQNVLTSFPQKVRFLVDRGIPVDQVVHVLNKVSLPKVLCGRSVDEIDRTLAFFEPFGGIDLILKRPQILNHDLDAQIIPRVNVLMELSDGDVDSVGKVLVRFPLFLNYSVEHVEGHVEFLSSFAELDYRQIFRIIQVYPAVVTASRERKLRPRIQFLKDCGLDSDEIFKFLIKAPTFLSTSFHENIAYKLVLLVKIGYRFRTKDFAVAVRSATRTNSLNMQKVIGMFLNYGFSCEEIVAMSKKHPQILQYNHASLEMKMEYLIEEMGRDTEELLVFPAFLGYKLDDRIKHRYEVKKSVRGAGMSINKLLSVSEETFTGKPKKAHA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02021 522 PANTHER CGI-12 PROTEIN-RELATED 84 239 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 Pfam mTERF 351 513 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 Pfam mTERF 108 387 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 155 184 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 435 466 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 256 287 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 120 150 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 365 396 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 467 499 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 SMART mt_12 329 360 IPR003690 GO:0003690|GO:0006355
Vimu10g02021 522 Gene3D Transcription termination factor 3, mitochondrial 288 521 IPR038538 -
Vimu10g02021 522 Gene3D Transcription termination factor 3, mitochondrial 96 287 IPR038538 -
Vimu10g02021 522 FunFam - 96 285 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g02021 mTERF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02021 - - pvu:PHAVU_009G045200g 754.207