Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02018 ATGACGTGGAGCATGTGGGCCACCACCTCCAAGTGTCTAGATATTTTTGAAACAAGGATATTTTCGCTGGCCGTTGGATCAGAGGGCGATTGTTACTCTCTCTGTGTGCGTGGTGAGAGAGGTTTTGCTTCCGCCAAGATTCTCAATTCTGATGCTGTAGTGCGATTCCGGTGGCTGGATTCATTCTGTGGGAATATGGGGGAGCTGGTCATGAGTGGAGAGAAGTCAGTCAGAGTGGAGAAGGACGAGAGTGGAAGTGGGAGCAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTCTTCCCAGGATGATTTTGAGGGTCTTATTGGTTGAAGCCGATGATTCCACAAGGCAGATTATTGCTGCGCTTCTCAGAAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGGTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGGGCAATATTGATCTAATACTGACGGAGGTGGATTTGCCATCCATATCTGGCTATGCACTTCTTACCTTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACGGTATACAAATGCATGCTGAGGGGTGCTGCCGATTATCTTGTTAAGCCAATAAGAAAAAATGAACTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAATCATCAGCCGCGGGCATAAATGGTCCCCAGGATGAGAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGCGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACTAAGCCTGACTTGGAAGCTGAGAGTGGGCCTGTTGATAACATGCAGGAATTTTCTCCGCTGAAATGTGGGGAAGAATATCCAAGTGGAGCAGAGACACAAGAGGTTGAAACATGTATTCGTTTGGGACAGACATTGATGATGAATGACAGTCATGCTGGAGGATTAACTATGCACAGAAATGGTGAAGCAAGCACAACTAATGACAAGGGTGCTGATGCGGAGCATTTGGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAGCTCATCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATTCCAACTGCACGGTAAAAAGTCCCACAGTTGATTGCACAGGCAAGGTTGACCTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAGCTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCCTTCAAGCGGTATACTAACAGGCAATTGCAAGTATTGACGCCTGCAGCGTTAGTTAAGTTCCCTGACCAACAAAGAGATCAGAGTGCAAATGGTGAGAAAGGCATCTCACACATTGTTACTGGCTGCAACTCCGATAGTTCAGCACCAGGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAGTCTGAAGTTGCAACCTCACACTCTCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGGCTATCGTTCTGTACTTCCTTCAATGTTTCGCACACAGTCAGGTCCACCAGCAATGCCAAGTCCAAGTTCAGTTGTGCTCCTTGAACCAAACTTTCAGAATGCATTTTATCAGTCAAACATTAAAGAGAGTAGTACAGAGCAGCTTTATCAACCTCTTGGTCCAAATGGGAACAGTTCCCAGAACCACATCGTGTACACACAGGAACACAAATCGGAATATGCGGAGGATCGAGGGCATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGTAATGGAAACGCAAGCCATTTTATCGGTTATGGAAGCAATTGTGGAAGTAGCAGCAATGCCGATCAAGTTACCACTGTCAGGGTAGCTTCAGAGAGCAAGAATGAGGACCTCACAAACAATACAAACACTCATCGATCAATCCAAAGAGAAGCGGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCAAGAGTGAAAGGACAGTTTGTTCGTCAAGTTCATCCTGATTCTCTTGTTGCAGAACAAGATGGTAAAGAATATGATCATTCACAGATTTCTGACTCACTGGAGAGGAGAGCATGA 2262 0.4469 MTWSMWATTSKCLDIFETRIFSLAVGSEGDCYSLCVRGERGFASAKILNSDAVVRFRWLDSFCGNMGELVMSGEKSVRVEKDESGSGSKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPGNIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSAAGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAESGPVDNMQEFSPLKCGEEYPSGAETQEVETCIRLGQTLMMNDSHAGGLTMHRNGEASTTNDKGADAEHLGNASISGEAHDNHYVQISSSKEAIDLIGAFHTHSNCTVKSPTVDCTGKVDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQVLTPAALVKFPDQQRDQSANGEKGISHIVTGCNSDSSAPGMQRCIVSPTTVQSKESEVATSHSQQGHSLPIPVKGVRFNDLCTGYRSVLPSMFRTQSGPPAMPSPSSVVLLEPNFQNAFYQSNIKESSTEQLYQPLGPNGNSSQNHIVYTQEHKSEYAEDRGHISPTTDQSVSSSFCNGNASHFIGYGSNCGSSSNADQVTTVRVASESKNEDLTNNTNTHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDSLVAEQDGKEYDHSQISDSLERRA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02018 753 MobiDBLite consensus disorder prediction 278 299 - -
Vimu10g02018 753 Pfam CCT motif 683 725 IPR010402 GO:0005515
Vimu10g02018 753 SUPERFAMILY CheY-like 107 231 IPR011006 -
Vimu10g02018 753 MobiDBLite consensus disorder prediction 708 753 - -
Vimu10g02018 753 MobiDBLite consensus disorder prediction 731 753 - -
Vimu10g02018 753 ProSiteProfiles CCT domain profile. 683 725 IPR010402 GO:0005515
Vimu10g02018 753 PANTHER TWO-COMPONENT RESPONSE REGULATOR 108 292 IPR045279 GO:0009736
Vimu10g02018 753 CDD psREC_PRR 109 212 - -
Vimu10g02018 753 Gene3D - 105 325 - -
Vimu10g02018 753 SMART REC_2 107 222 IPR001789 GO:0000160
Vimu10g02018 753 MobiDBLite consensus disorder prediction 708 722 - -
Vimu10g02018 753 ProSiteProfiles Response regulatory domain profile. 108 226 IPR001789 GO:0000160
Vimu10g02018 753 MobiDBLite consensus disorder prediction 233 263 - -
Vimu10g02018 753 Pfam Response regulator receiver domain 109 220 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02018 Vimu-Chr10 29557883 29563542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02018 380 727 Response Regulator Gene Family AT5G24470 32.676 3.01e-26 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vimu10g02018 Response_reg 4.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02018 K12130 - gmx:100777119 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02018 10 29557883 29563542 Vimu10g02018 10 29557883 29563542 ECH